Hb_012399_010

Information

Type -
Description -
Location Contig12399: 11890-18937
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012399_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_008835_010 0.0382578461 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
3 Hb_150851_010 0.0512742026 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_004680_030 0.1270469082 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
5 Hb_000061_280 0.1828449943 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
6 Hb_003025_070 0.1962695855 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
7 Hb_021419_050 0.2210998892 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
8 Hb_001545_190 0.2534399609 - - hypothetical protein VITISV_012031 [Vitis vinifera]
9 Hb_000120_690 0.2647187554 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
10 Hb_000038_190 0.3247443005 - - -
11 Hb_000046_150 0.3247443005 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000047_120 0.3247443005 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_120 0.3247443005 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
14 Hb_000094_140 0.3247443005 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
15 Hb_000100_080 0.3247443005 - - -
16 Hb_000120_830 0.3247443005 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
17 Hb_000134_060 0.3247443005 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
18 Hb_000173_450 0.3247443005 - - -
19 Hb_000175_170 0.3247443005 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
20 Hb_000181_170 0.3247443005 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]

Gene co-expression network

sample Hb_012399_010 Hb_012399_010 Hb_008835_010 Hb_008835_010 Hb_012399_010--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_012399_010--Hb_150851_010 Hb_004680_030 Hb_004680_030 Hb_012399_010--Hb_004680_030 Hb_000061_280 Hb_000061_280 Hb_012399_010--Hb_000061_280 Hb_003025_070 Hb_003025_070 Hb_012399_010--Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_012399_010--Hb_021419_050 Hb_008835_010--Hb_150851_010 Hb_008835_010--Hb_000061_280 Hb_008835_010--Hb_004680_030 Hb_008835_010--Hb_003025_070 Hb_001545_190 Hb_001545_190 Hb_008835_010--Hb_001545_190 Hb_150851_010--Hb_000061_280 Hb_150851_010--Hb_004680_030 Hb_150851_010--Hb_003025_070 Hb_150851_010--Hb_001545_190 Hb_000038_190 Hb_000038_190 Hb_004680_030--Hb_000038_190 Hb_000046_150 Hb_000046_150 Hb_004680_030--Hb_000046_150 Hb_000047_120 Hb_000047_120 Hb_004680_030--Hb_000047_120 Hb_000061_280--Hb_001545_190 Hb_000061_280--Hb_003025_070 Hb_000061_280--Hb_021419_050 Hb_003025_070--Hb_021419_050 Hb_003025_070--Hb_004680_030 Hb_108886_010 Hb_108886_010 Hb_003025_070--Hb_108886_010 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_004680_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00787679 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0323944 0 0

CAGE analysis