Hb_000046_150

Information

Type -
Description -
Location Contig46: 121476-122238
Sequence    

Annotation

kegg
ID rcu:RCOM_0679340
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002516850.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SJK9
description Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1
trembl
ID B9RSY1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0679340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_190 0.0 - - -
2 Hb_000046_150 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000047_120 0.0 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000062_120 0.0 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
5 Hb_000094_140 0.0 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
6 Hb_000100_080 0.0 - - -
7 Hb_000120_830 0.0 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
8 Hb_000134_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
9 Hb_000173_450 0.0 - - -
10 Hb_000175_170 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
11 Hb_000181_170 0.0 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
12 Hb_000298_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000313_270 0.0 - - PREDICTED: uncharacterized protein LOC105761822 [Gossypium raimondii]
14 Hb_000327_090 0.0 - - PREDICTED: uncharacterized protein LOC102627976 [Citrus sinensis]
15 Hb_000421_080 0.0 - - -
16 Hb_000453_200 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105113357 [Populus euphratica]
17 Hb_000457_070 0.0 - - nucleotide-binding protein, putative [Ricinus communis]
18 Hb_000487_090 0.0 - - PREDICTED: pectinesterase inhibitor-like [Jatropha curcas]
19 Hb_000585_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000823_020 0.0 - - -

Gene co-expression network

sample Hb_000038_190 Hb_000038_190 Hb_000046_150 Hb_000046_150 Hb_000038_190--Hb_000046_150 Hb_000047_120 Hb_000047_120 Hb_000038_190--Hb_000047_120 Hb_000062_120 Hb_000062_120 Hb_000038_190--Hb_000062_120 Hb_000094_140 Hb_000094_140 Hb_000038_190--Hb_000094_140 Hb_000100_080 Hb_000100_080 Hb_000038_190--Hb_000100_080 Hb_000120_830 Hb_000120_830 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830 Hb_000038_190--Hb_000046_150 Hb_000038_190--Hb_000047_120 Hb_000038_190--Hb_000062_120 Hb_000038_190--Hb_000094_140 Hb_000038_190--Hb_000100_080 Hb_000038_190--Hb_000120_830
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.33068 0 0

CAGE analysis