Hb_000061_280

Information

Type -
Description -
Location Contig61: 249541-250352
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002597mg
description hypothetical protein
nr
ID XP_012080313.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
swissprot
ID Q9FFG8
description Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
trembl
ID A0A067KGB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
2 Hb_001545_190 0.0719856972 - - hypothetical protein VITISV_012031 [Vitis vinifera]
3 Hb_150851_010 0.1322215228 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_008835_010 0.1451294529 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
5 Hb_012399_010 0.1828449943 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003025_070 0.2611599881 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
7 Hb_021419_050 0.2658165489 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
8 Hb_004680_030 0.3050620202 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
9 Hb_001060_080 0.3252371715 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_003777_010 0.327762066 - - -
11 Hb_108886_010 0.3394288849 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_006788_080 0.3443739004 - - ammonium transporter, putative [Ricinus communis]
13 Hb_001976_080 0.3453341576 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
14 Hb_011671_060 0.3600962452 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
15 Hb_000120_690 0.3631815236 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
16 Hb_007757_140 0.3840114722 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_001235_090 0.38847179 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
18 Hb_001338_060 0.390132894 - - -
19 Hb_001462_020 0.3932906901 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_071586_010 0.3936533514 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_280 Hb_000061_280 Hb_001545_190 Hb_001545_190 Hb_000061_280--Hb_001545_190 Hb_150851_010 Hb_150851_010 Hb_000061_280--Hb_150851_010 Hb_008835_010 Hb_008835_010 Hb_000061_280--Hb_008835_010 Hb_012399_010 Hb_012399_010 Hb_000061_280--Hb_012399_010 Hb_003025_070 Hb_003025_070 Hb_000061_280--Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_000061_280--Hb_021419_050 Hb_001545_190--Hb_150851_010 Hb_001545_190--Hb_008835_010 Hb_001545_190--Hb_012399_010 Hb_001545_190--Hb_021419_050 Hb_001545_190--Hb_003025_070 Hb_150851_010--Hb_008835_010 Hb_150851_010--Hb_012399_010 Hb_004680_030 Hb_004680_030 Hb_150851_010--Hb_004680_030 Hb_150851_010--Hb_003025_070 Hb_008835_010--Hb_012399_010 Hb_008835_010--Hb_004680_030 Hb_008835_010--Hb_003025_070 Hb_012399_010--Hb_004680_030 Hb_012399_010--Hb_003025_070 Hb_012399_010--Hb_021419_050 Hb_003025_070--Hb_021419_050 Hb_003025_070--Hb_004680_030 Hb_108886_010 Hb_108886_010 Hb_003025_070--Hb_108886_010 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_004680_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0870379 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136065 0 0

CAGE analysis