Hb_001545_190

Information

Type -
Description -
Location Contig1545: 236753-237133
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID CAN80132.1
description hypothetical protein VITISV_012031 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AJD0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_190 0.0 - - hypothetical protein VITISV_012031 [Vitis vinifera]
2 Hb_000061_280 0.0719856972 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
3 Hb_150851_010 0.2034342707 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_008835_010 0.2162039106 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
5 Hb_012399_010 0.2534399609 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_021419_050 0.3101597047 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
7 Hb_003025_070 0.3112108912 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
8 Hb_001060_080 0.3124162537 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
9 Hb_003777_010 0.314378944 - - -
10 Hb_108886_010 0.3415634812 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_006788_080 0.3537554681 - - ammonium transporter, putative [Ricinus communis]
12 Hb_001976_080 0.3572652783 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
13 Hb_007537_010 0.3659246165 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_004680_030 0.373170015 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
15 Hb_011671_060 0.377823483 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
16 Hb_001338_060 0.3849506014 - - -
17 Hb_005045_040 0.3923695108 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
18 Hb_007757_140 0.3984252362 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
19 Hb_000183_060 0.404240631 - - PREDICTED: uncharacterized protein LOC105648176 [Jatropha curcas]
20 Hb_065182_010 0.4112069334 - - hypothetical protein JCGZ_20878 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_190 Hb_001545_190 Hb_000061_280 Hb_000061_280 Hb_001545_190--Hb_000061_280 Hb_150851_010 Hb_150851_010 Hb_001545_190--Hb_150851_010 Hb_008835_010 Hb_008835_010 Hb_001545_190--Hb_008835_010 Hb_012399_010 Hb_012399_010 Hb_001545_190--Hb_012399_010 Hb_021419_050 Hb_021419_050 Hb_001545_190--Hb_021419_050 Hb_003025_070 Hb_003025_070 Hb_001545_190--Hb_003025_070 Hb_000061_280--Hb_150851_010 Hb_000061_280--Hb_008835_010 Hb_000061_280--Hb_012399_010 Hb_000061_280--Hb_003025_070 Hb_000061_280--Hb_021419_050 Hb_150851_010--Hb_008835_010 Hb_150851_010--Hb_012399_010 Hb_004680_030 Hb_004680_030 Hb_150851_010--Hb_004680_030 Hb_150851_010--Hb_003025_070 Hb_008835_010--Hb_012399_010 Hb_008835_010--Hb_004680_030 Hb_008835_010--Hb_003025_070 Hb_012399_010--Hb_004680_030 Hb_012399_010--Hb_003025_070 Hb_012399_010--Hb_021419_050 Hb_021419_050--Hb_003025_070 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_004680_030 Hb_003025_070--Hb_004680_030 Hb_108886_010 Hb_108886_010 Hb_003025_070--Hb_108886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.244485 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.271261 0 0

CAGE analysis