Hb_034905_010

Information

Type -
Description -
Location Contig34905: 1-309
Sequence    

Annotation

kegg
ID bvg:104891359
description uncharacterized LOC104891359
nr
ID XP_010675344.1
description PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A5B589
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018584 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034905_010 0.0 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
2 Hb_176472_010 0.2056587916 - - BnaC01g33060D [Brassica napus]
3 Hb_002793_080 0.2433375175 - - ribonuclease t2, putative [Ricinus communis]
4 Hb_000733_150 0.2464869345 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
5 Hb_117807_030 0.2465131144 - - Protein MCM10 [Gossypium arboreum]
6 Hb_000042_180 0.26615814 - - -
7 Hb_168319_020 0.2735428117 - - conserved hypothetical protein [Ricinus communis]
8 Hb_153774_010 0.2868994043 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001894_180 0.2871425156 - - galactinol synthase [Manihot esculenta]
10 Hb_051055_010 0.3011131197 - - -
11 Hb_020712_050 0.3036536388 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
12 Hb_036537_010 0.3284683396 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000398_050 0.3348125276 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
14 Hb_002026_160 0.3381449474 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
15 Hb_000003_850 0.3456876121 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
16 Hb_002193_070 0.3483887967 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001998_100 0.3484937863 - - -
18 Hb_009010_040 0.3493621925 - - Peptide transporter, putative [Ricinus communis]
19 Hb_000110_390 0.3533873416 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
20 Hb_000959_180 0.3537660932 - - hypothetical protein JCGZ_09448 [Jatropha curcas]

Gene co-expression network

sample Hb_034905_010 Hb_034905_010 Hb_176472_010 Hb_176472_010 Hb_034905_010--Hb_176472_010 Hb_002793_080 Hb_002793_080 Hb_034905_010--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_034905_010--Hb_000733_150 Hb_117807_030 Hb_117807_030 Hb_034905_010--Hb_117807_030 Hb_000042_180 Hb_000042_180 Hb_034905_010--Hb_000042_180 Hb_168319_020 Hb_168319_020 Hb_034905_010--Hb_168319_020 Hb_176472_010--Hb_117807_030 Hb_001235_090 Hb_001235_090 Hb_176472_010--Hb_001235_090 Hb_000545_160 Hb_000545_160 Hb_176472_010--Hb_000545_160 Hb_000120_690 Hb_000120_690 Hb_176472_010--Hb_000120_690 Hb_036537_010 Hb_036537_010 Hb_176472_010--Hb_036537_010 Hb_002793_080--Hb_000733_150 Hb_002793_080--Hb_036537_010 Hb_051055_010 Hb_051055_010 Hb_002793_080--Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_002793_080--Hb_020712_050 Hb_002793_080--Hb_000042_180 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_051055_010 Hb_000733_150--Hb_020712_050 Hb_000733_150--Hb_000042_180 Hb_117807_030--Hb_001235_090 Hb_000191_010 Hb_000191_010 Hb_117807_030--Hb_000191_010 Hb_117807_030--Hb_000545_160 Hb_117807_030--Hb_000120_690 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_002193_070 Hb_002193_070 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_000110_390 Hb_000110_390 Hb_168319_020--Hb_000110_390 Hb_001894_180 Hb_001894_180 Hb_168319_020--Hb_001894_180 Hb_009010_040 Hb_009010_040 Hb_168319_020--Hb_009010_040 Hb_168319_020--Hb_003360_050 Hb_153774_010 Hb_153774_010 Hb_168319_020--Hb_153774_010 Hb_050229_030 Hb_050229_030 Hb_168319_020--Hb_050229_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135248 0 0.798993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.395294 0 0

CAGE analysis