Hb_003360_050

Information

Type -
Description -
Location Contig3360: 81817-82200
Sequence    

Annotation

kegg
ID rcu:RCOM_0293130
description calmodulin binding protein, putative
nr
ID XP_002530333.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q9SA49
description Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana GN=SAUR41 PE=2 SV=1
trembl
ID B9SWG4
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0293130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003360_050 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_002193_070 0.1861206694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001998_100 0.1869915234 - - -
4 Hb_009010_040 0.1929940299 - - Peptide transporter, putative [Ricinus communis]
5 Hb_003014_010 0.1965080401 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
6 Hb_000042_180 0.1974008574 - - -
7 Hb_153774_010 0.2181256761 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009111_060 0.2203331379 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
9 Hb_001335_040 0.2294588975 - - conserved hypothetical protein [Ricinus communis]
10 Hb_168319_020 0.2436770895 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034858_010 0.2519169357 - - -
12 Hb_012565_010 0.252181341 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
13 Hb_000566_060 0.254099078 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004317_020 0.2546081997 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
15 Hb_093084_040 0.2561631038 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
16 Hb_000152_730 0.2585124595 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000269_050 0.2594647229 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
18 Hb_002675_170 0.2599619334 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
19 Hb_000740_140 0.2604105261 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
20 Hb_000622_140 0.2615780948 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003360_050 Hb_003360_050 Hb_002193_070 Hb_002193_070 Hb_003360_050--Hb_002193_070 Hb_001998_100 Hb_001998_100 Hb_003360_050--Hb_001998_100 Hb_009010_040 Hb_009010_040 Hb_003360_050--Hb_009010_040 Hb_003014_010 Hb_003014_010 Hb_003360_050--Hb_003014_010 Hb_000042_180 Hb_000042_180 Hb_003360_050--Hb_000042_180 Hb_153774_010 Hb_153774_010 Hb_003360_050--Hb_153774_010 Hb_012565_010 Hb_012565_010 Hb_002193_070--Hb_012565_010 Hb_002193_070--Hb_009010_040 Hb_002675_170 Hb_002675_170 Hb_002193_070--Hb_002675_170 Hb_011900_040 Hb_011900_040 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_001998_100--Hb_153774_010 Hb_001998_100--Hb_003014_010 Hb_009111_060 Hb_009111_060 Hb_001998_100--Hb_009111_060 Hb_001998_100--Hb_009010_040 Hb_031822_020 Hb_031822_020 Hb_001998_100--Hb_031822_020 Hb_120496_010 Hb_120496_010 Hb_001998_100--Hb_120496_010 Hb_009010_040--Hb_009111_060 Hb_005356_050 Hb_005356_050 Hb_009010_040--Hb_005356_050 Hb_009010_040--Hb_153774_010 Hb_009010_040--Hb_031822_020 Hb_001892_040 Hb_001892_040 Hb_003014_010--Hb_001892_040 Hb_005976_030 Hb_005976_030 Hb_003014_010--Hb_005976_030 Hb_001591_020 Hb_001591_020 Hb_003014_010--Hb_001591_020 Hb_000258_010 Hb_000258_010 Hb_003014_010--Hb_000258_010 Hb_000733_170 Hb_000733_170 Hb_003014_010--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_003014_010--Hb_000530_080 Hb_002793_080 Hb_002793_080 Hb_000042_180--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_000042_180--Hb_000733_150 Hb_000042_180--Hb_001998_100 Hb_000042_180--Hb_002193_070 Hb_000042_180--Hb_003014_010 Hb_153774_010--Hb_009111_060 Hb_002759_270 Hb_002759_270 Hb_153774_010--Hb_002759_270 Hb_153774_010--Hb_005356_050 Hb_002925_040 Hb_002925_040 Hb_153774_010--Hb_002925_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0774612 1.92282 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.26776 0.0732668 0

CAGE analysis