Hb_002675_170

Information

Type -
Description -
Location Contig2675: 149587-151308
Sequence    

Annotation

kegg
ID rcu:RCOM_0894910
description Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative
nr
ID KDP37179.1
description hypothetical protein JCGZ_06235 [Jatropha curcas]
swissprot
ID Q9SJE2
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
trembl
ID A0A067KZB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06235 PE=4 SV=1
Gene Ontology
ID GO:0016790
description palmitoyl-acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27863: 149625-149741 , PASA_asmbl_27864: 150051-151349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_170 0.0 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
2 Hb_012565_010 0.1016872835 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
3 Hb_011900_040 0.1645665673 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
4 Hb_005455_100 0.1660361169 - - amino acid transporter, putative [Ricinus communis]
5 Hb_001335_040 0.1681125991 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002193_070 0.177477396 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_010833_010 0.1782960788 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
8 Hb_011169_010 0.1789324433 - - mta/sah nucleosidase, putative [Ricinus communis]
9 Hb_000868_020 0.1870493878 - - -
10 Hb_102772_010 0.1903859862 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003765_010 0.1935382977 - - berberine bridge enzyme [Hevea brasiliensis]
12 Hb_103468_010 0.1936089458 - - protein binding protein, putative [Ricinus communis]
13 Hb_010327_060 0.1955276755 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
14 Hb_153544_020 0.1960810542 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
15 Hb_000107_240 0.1965240423 - - organic anion transporter, putative [Ricinus communis]
16 Hb_006249_010 0.1970781737 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
17 Hb_000307_160 0.1977366012 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
18 Hb_003754_010 0.2011017286 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
19 Hb_001634_050 0.2017473208 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
20 Hb_000028_090 0.202110392 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]

Gene co-expression network

sample Hb_002675_170 Hb_002675_170 Hb_012565_010 Hb_012565_010 Hb_002675_170--Hb_012565_010 Hb_011900_040 Hb_011900_040 Hb_002675_170--Hb_011900_040 Hb_005455_100 Hb_005455_100 Hb_002675_170--Hb_005455_100 Hb_001335_040 Hb_001335_040 Hb_002675_170--Hb_001335_040 Hb_002193_070 Hb_002193_070 Hb_002675_170--Hb_002193_070 Hb_010833_010 Hb_010833_010 Hb_002675_170--Hb_010833_010 Hb_012565_010--Hb_002193_070 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_012565_010--Hb_005455_100 Hb_000617_300 Hb_000617_300 Hb_012565_010--Hb_000617_300 Hb_000083_260 Hb_000083_260 Hb_011900_040--Hb_000083_260 Hb_011900_040--Hb_001335_040 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_005455_100--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_005455_100--Hb_003754_010 Hb_153544_020 Hb_153544_020 Hb_005455_100--Hb_153544_020 Hb_150179_010 Hb_150179_010 Hb_005455_100--Hb_150179_010 Hb_004957_010 Hb_004957_010 Hb_005455_100--Hb_004957_010 Hb_001557_030 Hb_001557_030 Hb_005455_100--Hb_001557_030 Hb_019053_050 Hb_019053_050 Hb_001335_040--Hb_019053_050 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120 Hb_009010_040 Hb_009010_040 Hb_002193_070--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_002193_070--Hb_011900_040 Hb_002193_070--Hb_001335_040 Hb_010833_010--Hb_153544_020 Hb_010833_010--Hb_003754_010 Hb_006651_020 Hb_006651_020 Hb_010833_010--Hb_006651_020 Hb_010833_010--Hb_004957_010 Hb_000997_220 Hb_000997_220 Hb_010833_010--Hb_000997_220 Hb_010327_060 Hb_010327_060 Hb_010833_010--Hb_010327_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.365691 9.06038 0 0.0202985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435679 0 0.699047 0.0412315 1.13086

CAGE analysis