Hb_000331_660

Information

Type -
Description -
Location Contig331: 504720-506467
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09890g
description POPTRDRAFT_666563; Cys endopeptidase family protein
nr
ID XP_012079936.1
description PREDICTED: vignain [Jatropha curcas]
swissprot
ID P25803
description Vignain OS=Phaseolus vulgaris PE=2 SV=2
trembl
ID A0A067K4E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11373 PE=3 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34825: 504571-506482 , PASA_asmbl_34826: 506486-506610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_660 0.0 - - PREDICTED: vignain [Jatropha curcas]
2 Hb_017862_040 0.0897588902 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
3 Hb_103942_020 0.0910352739 - - unknown [Zea mays]
4 Hb_005539_330 0.0974217005 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
5 Hb_000012_340 0.1017439209 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
6 Hb_003607_040 0.1023932372 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_001454_030 0.1055760094 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
8 Hb_001123_080 0.1061584873 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002701_200 0.1067439062 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
10 Hb_001804_020 0.1082665022 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
11 Hb_002215_020 0.1098847929 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
12 Hb_002186_190 0.112389239 - - -
13 Hb_007441_320 0.1156991742 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
14 Hb_000628_080 0.1198023414 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
15 Hb_005183_090 0.1207683233 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
16 Hb_001232_170 0.1215538455 - - sulfate transporter, putative [Ricinus communis]
17 Hb_000358_070 0.1234349233 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
18 Hb_001597_040 0.125407182 - - -
19 Hb_000816_170 0.1261007023 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
20 Hb_000083_260 0.1261741625 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000331_660 Hb_000331_660 Hb_017862_040 Hb_017862_040 Hb_000331_660--Hb_017862_040 Hb_103942_020 Hb_103942_020 Hb_000331_660--Hb_103942_020 Hb_005539_330 Hb_005539_330 Hb_000331_660--Hb_005539_330 Hb_000012_340 Hb_000012_340 Hb_000331_660--Hb_000012_340 Hb_003607_040 Hb_003607_040 Hb_000331_660--Hb_003607_040 Hb_001454_030 Hb_001454_030 Hb_000331_660--Hb_001454_030 Hb_002701_200 Hb_002701_200 Hb_017862_040--Hb_002701_200 Hb_031822_020 Hb_031822_020 Hb_017862_040--Hb_031822_020 Hb_001804_020 Hb_001804_020 Hb_017862_040--Hb_001804_020 Hb_017862_040--Hb_103942_020 Hb_017524_020 Hb_017524_020 Hb_017862_040--Hb_017524_020 Hb_103942_020--Hb_001454_030 Hb_007441_320 Hb_007441_320 Hb_103942_020--Hb_007441_320 Hb_000628_080 Hb_000628_080 Hb_103942_020--Hb_000628_080 Hb_103942_020--Hb_003607_040 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_006889_010 Hb_006889_010 Hb_005539_330--Hb_006889_010 Hb_005539_330--Hb_000012_340 Hb_085158_010 Hb_085158_010 Hb_005539_330--Hb_085158_010 Hb_000429_070 Hb_000429_070 Hb_005539_330--Hb_000429_070 Hb_000431_050 Hb_000431_050 Hb_005539_330--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_005539_330--Hb_006603_010 Hb_000816_170 Hb_000816_170 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_000012_340--Hb_003607_040 Hb_000012_340--Hb_002186_190 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_001454_030--Hb_007441_320 Hb_001454_030--Hb_000628_080 Hb_001634_070 Hb_001634_070 Hb_001454_030--Hb_001634_070 Hb_001454_030--Hb_002186_190 Hb_001454_030--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.784686 0.550434 34.9843 0.373504 0.0701963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0456194 0.143529 0 0.129617 0.959805

CAGE analysis