Hb_017862_040

Information

Type -
Description -
Location Contig17862: 27727-39354
Sequence    

Annotation

kegg
ID pmum:103323278
description pleiotropic drug resistance protein 3-like
nr
ID XP_008223485.1
description PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
swissprot
ID Q5W274
description Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1
trembl
ID B9HIH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s09840g PE=4 SV=2
Gene Ontology
ID GO:0016021
description pleiotropic drug resistance protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017862_040 0.0 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
2 Hb_000331_660 0.0897588902 - - PREDICTED: vignain [Jatropha curcas]
3 Hb_002701_200 0.125933456 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
4 Hb_031822_020 0.1261040293 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
5 Hb_001804_020 0.1294474094 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
6 Hb_103942_020 0.1355029506 - - unknown [Zea mays]
7 Hb_017524_020 0.1384319644 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
8 Hb_000628_080 0.1425208403 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
9 Hb_001597_040 0.1428503663 - - -
10 Hb_050786_010 0.146118276 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
11 Hb_001454_030 0.1464228608 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
12 Hb_007441_320 0.1498469325 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
13 Hb_005539_330 0.150948021 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
14 Hb_001634_070 0.1516894624 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001628_040 0.1520909397 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
16 Hb_005183_090 0.1522430265 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
17 Hb_000296_030 0.158934993 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
18 Hb_003607_040 0.1596099969 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_000270_590 0.1599663119 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
20 Hb_002186_190 0.1611246246 - - -

Gene co-expression network

sample Hb_017862_040 Hb_017862_040 Hb_000331_660 Hb_000331_660 Hb_017862_040--Hb_000331_660 Hb_002701_200 Hb_002701_200 Hb_017862_040--Hb_002701_200 Hb_031822_020 Hb_031822_020 Hb_017862_040--Hb_031822_020 Hb_001804_020 Hb_001804_020 Hb_017862_040--Hb_001804_020 Hb_103942_020 Hb_103942_020 Hb_017862_040--Hb_103942_020 Hb_017524_020 Hb_017524_020 Hb_017862_040--Hb_017524_020 Hb_000331_660--Hb_103942_020 Hb_005539_330 Hb_005539_330 Hb_000331_660--Hb_005539_330 Hb_000012_340 Hb_000012_340 Hb_000331_660--Hb_000012_340 Hb_003607_040 Hb_003607_040 Hb_000331_660--Hb_003607_040 Hb_001454_030 Hb_001454_030 Hb_000331_660--Hb_001454_030 Hb_000628_080 Hb_000628_080 Hb_002701_200--Hb_000628_080 Hb_000905_130 Hb_000905_130 Hb_002701_200--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_002701_200--Hb_000270_590 Hb_002701_200--Hb_001804_020 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050 Hb_000296_030 Hb_000296_030 Hb_002701_200--Hb_000296_030 Hb_031822_020--Hb_001804_020 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_120496_010 Hb_120496_010 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_001804_020--Hb_007441_320 Hb_001804_020--Hb_003607_040 Hb_001804_020--Hb_103942_020 Hb_002215_020 Hb_002215_020 Hb_001804_020--Hb_002215_020 Hb_103942_020--Hb_001454_030 Hb_103942_020--Hb_007441_320 Hb_103942_020--Hb_000628_080 Hb_103942_020--Hb_003607_040 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_017524_020--Hb_000628_080 Hb_001277_390 Hb_001277_390 Hb_017524_020--Hb_001277_390 Hb_017524_020--Hb_000905_130 Hb_017524_020--Hb_103942_020 Hb_017524_020--Hb_001454_030 Hb_017524_020--Hb_000224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00522787 0.0187831 0.0161253 1.23854 0.0251305 0.0076758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150834 0 0.00298566 0.0161856

CAGE analysis