Hb_011900_040

Information

Type -
Description -
Location Contig11900: 47185-52307
Sequence    

Annotation

kegg
ID pxb:103926517
description microtubule-associated protein 70-5
nr
ID XP_012078091.1
description PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
swissprot
ID Q8GYX3
description Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1
trembl
ID A0A067KM70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13685 PE=4 SV=1
Gene Ontology
ID GO:0008017
description microtubule-associated protein 70-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05618: 46920-47549 , PASA_asmbl_05619: 47558-48068 , PASA_asmbl_05620: 48085-49124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011900_040 0.0 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
2 Hb_000083_260 0.1059170529 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001335_040 0.1091993234 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005539_330 0.1184714827 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
5 Hb_000331_660 0.1279629356 - - PREDICTED: vignain [Jatropha curcas]
6 Hb_000012_340 0.1323045535 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
7 Hb_000429_070 0.1340752506 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
8 Hb_012180_070 0.1345430138 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005396_020 0.1354410503 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_001401_130 0.1367590541 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
11 Hb_006889_010 0.1384232577 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
12 Hb_001386_070 0.1384643857 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
13 Hb_003528_090 0.1403082504 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
14 Hb_001634_050 0.1403179996 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
15 Hb_001157_120 0.1412609367 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
16 Hb_001123_080 0.1454252372 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002186_190 0.1476639304 - - -
18 Hb_002215_020 0.1478863095 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
19 Hb_006816_060 0.1479843429 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
20 Hb_000107_240 0.1497398495 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011900_040 Hb_011900_040 Hb_000083_260 Hb_000083_260 Hb_011900_040--Hb_000083_260 Hb_001335_040 Hb_001335_040 Hb_011900_040--Hb_001335_040 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_000083_260--Hb_000012_340 Hb_000816_170 Hb_000816_170 Hb_000083_260--Hb_000816_170 Hb_003607_040 Hb_003607_040 Hb_000083_260--Hb_003607_040 Hb_006889_010 Hb_006889_010 Hb_000083_260--Hb_006889_010 Hb_001123_080 Hb_001123_080 Hb_000083_260--Hb_001123_080 Hb_170597_010 Hb_170597_010 Hb_000083_260--Hb_170597_010 Hb_019053_050 Hb_019053_050 Hb_001335_040--Hb_019053_050 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120 Hb_005539_330--Hb_006889_010 Hb_005539_330--Hb_000012_340 Hb_085158_010 Hb_085158_010 Hb_005539_330--Hb_085158_010 Hb_005539_330--Hb_000429_070 Hb_000431_050 Hb_000431_050 Hb_005539_330--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_005539_330--Hb_006603_010 Hb_017862_040 Hb_017862_040 Hb_000331_660--Hb_017862_040 Hb_103942_020 Hb_103942_020 Hb_000331_660--Hb_103942_020 Hb_000331_660--Hb_005539_330 Hb_000331_660--Hb_000012_340 Hb_000331_660--Hb_003607_040 Hb_001454_030 Hb_001454_030 Hb_000331_660--Hb_001454_030 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_000012_340--Hb_001123_080 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_000429_070--Hb_001401_130 Hb_001386_070 Hb_001386_070 Hb_000429_070--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_000429_070--Hb_012180_070 Hb_000485_050 Hb_000485_050 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_000429_070--Hb_003925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00975286 0.900539 2.01718 78.0225 0.675181 0.0374499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.199464 0.0697534 1.7534 0.554934 4.20332

CAGE analysis