Hb_009010_040

Information

Type -
Description -
Location Contig9010: 57465-61925
Sequence    

Annotation

kegg
ID rcu:RCOM_0865220
description Peptide transporter, putative
nr
ID XP_002519847.1
description Peptide transporter, putative [Ricinus communis]
swissprot
ID Q9LQL2
description Protein NRT1/ PTR FAMILY 7.3 OS=Arabidopsis thaliana GN=NPF7.3 PE=1 SV=2
trembl
ID B9S1I2
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_0865220 PE=4 SV=1
Gene Ontology
ID GO:0016020
description proton-dependent oligopeptide transport family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61953: 59895-60381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009010_040 0.0 - - Peptide transporter, putative [Ricinus communis]
2 Hb_009111_060 0.1502857592 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
3 Hb_001998_100 0.1574504715 - - -
4 Hb_005356_050 0.1683656963 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
5 Hb_002193_070 0.1704849583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_153774_010 0.171248375 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031822_020 0.1840807773 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
8 Hb_003360_050 0.1929940299 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_011900_040 0.1967674833 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
10 Hb_004925_030 0.1972054549 - - EXORDIUM like 1 [Theobroma cacao]
11 Hb_001335_040 0.1974316643 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001804_020 0.1980385257 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
13 Hb_000083_260 0.2003581974 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002701_200 0.2007007843 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
15 Hb_000302_110 0.2047725701 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_011689_090 0.2074794376 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
17 Hb_002874_100 0.2083834769 - - cytochrome P450, putative [Ricinus communis]
18 Hb_019053_050 0.2084024986 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000358_130 0.2100196719 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_116679_010 0.2101414892 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_009010_040 Hb_009010_040 Hb_009111_060 Hb_009111_060 Hb_009010_040--Hb_009111_060 Hb_001998_100 Hb_001998_100 Hb_009010_040--Hb_001998_100 Hb_005356_050 Hb_005356_050 Hb_009010_040--Hb_005356_050 Hb_002193_070 Hb_002193_070 Hb_009010_040--Hb_002193_070 Hb_153774_010 Hb_153774_010 Hb_009010_040--Hb_153774_010 Hb_031822_020 Hb_031822_020 Hb_009010_040--Hb_031822_020 Hb_009111_060--Hb_031822_020 Hb_000381_140 Hb_000381_140 Hb_009111_060--Hb_000381_140 Hb_002874_100 Hb_002874_100 Hb_009111_060--Hb_002874_100 Hb_000269_050 Hb_000269_050 Hb_009111_060--Hb_000269_050 Hb_000366_070 Hb_000366_070 Hb_009111_060--Hb_000366_070 Hb_000270_590 Hb_000270_590 Hb_009111_060--Hb_000270_590 Hb_001998_100--Hb_153774_010 Hb_003014_010 Hb_003014_010 Hb_001998_100--Hb_003014_010 Hb_001998_100--Hb_009111_060 Hb_001998_100--Hb_031822_020 Hb_120496_010 Hb_120496_010 Hb_001998_100--Hb_120496_010 Hb_005183_020 Hb_005183_020 Hb_005356_050--Hb_005183_020 Hb_002320_050 Hb_002320_050 Hb_005356_050--Hb_002320_050 Hb_001396_080 Hb_001396_080 Hb_005356_050--Hb_001396_080 Hb_011930_090 Hb_011930_090 Hb_005356_050--Hb_011930_090 Hb_006061_020 Hb_006061_020 Hb_005356_050--Hb_006061_020 Hb_000710_130 Hb_000710_130 Hb_005356_050--Hb_000710_130 Hb_012565_010 Hb_012565_010 Hb_002193_070--Hb_012565_010 Hb_002675_170 Hb_002675_170 Hb_002193_070--Hb_002675_170 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_011900_040 Hb_011900_040 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_153774_010--Hb_009111_060 Hb_002759_270 Hb_002759_270 Hb_153774_010--Hb_002759_270 Hb_153774_010--Hb_005356_050 Hb_002925_040 Hb_002925_040 Hb_153774_010--Hb_002925_040 Hb_001804_020 Hb_001804_020 Hb_031822_020--Hb_001804_020 Hb_002701_200 Hb_002701_200 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.037334 1.02644 0.70547 22.7189 0 0.0252512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296857 0.100106 1.61595 0.590454 0.141267

CAGE analysis