Hb_000366_070

Information

Type -
Description -
Location Contig366: 62934-66624
Sequence    

Annotation

kegg
ID rcu:RCOM_0222890
description oligopeptide transporter, putative
nr
ID XP_012078774.1
description PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
swissprot
ID Q9SZY4
description Protein NRT1/ PTR FAMILY 6.2 OS=Arabidopsis thaliana GN=NPF6.2 PE=1 SV=1
trembl
ID A0A067KBK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13318 PE=3 SV=1
Gene Ontology
ID GO:0005623
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37676: 63204-64010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_070 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
2 Hb_000269_050 0.1150438578 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
3 Hb_000270_590 0.1220834634 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
4 Hb_003058_090 0.1267622114 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
5 Hb_007426_100 0.1271765787 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000381_140 0.1307119458 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
7 Hb_003050_210 0.1382108116 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
8 Hb_009111_060 0.1391327663 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
9 Hb_002874_100 0.1434137608 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000566_060 0.1443677344 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004317_020 0.1449756961 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
12 Hb_034858_010 0.1457238988 - - -
13 Hb_000194_030 0.1498757263 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
14 Hb_000296_030 0.1533148517 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
15 Hb_000905_130 0.1590419966 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
16 Hb_007292_020 0.1630187001 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
17 Hb_000363_100 0.1630354445 - - -
18 Hb_000224_050 0.1640427829 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001104_290 0.164217688 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
20 Hb_000224_070 0.1649808233 - - -

Gene co-expression network

sample Hb_000366_070 Hb_000366_070 Hb_000269_050 Hb_000269_050 Hb_000366_070--Hb_000269_050 Hb_000270_590 Hb_000270_590 Hb_000366_070--Hb_000270_590 Hb_003058_090 Hb_003058_090 Hb_000366_070--Hb_003058_090 Hb_007426_100 Hb_007426_100 Hb_000366_070--Hb_007426_100 Hb_000381_140 Hb_000381_140 Hb_000366_070--Hb_000381_140 Hb_003050_210 Hb_003050_210 Hb_000366_070--Hb_003050_210 Hb_000269_050--Hb_003058_090 Hb_000269_050--Hb_000381_140 Hb_000296_030 Hb_000296_030 Hb_000269_050--Hb_000296_030 Hb_000224_070 Hb_000224_070 Hb_000269_050--Hb_000224_070 Hb_002874_100 Hb_002874_100 Hb_000269_050--Hb_002874_100 Hb_000269_050--Hb_007426_100 Hb_000905_130 Hb_000905_130 Hb_000270_590--Hb_000905_130 Hb_000270_590--Hb_003050_210 Hb_002701_200 Hb_002701_200 Hb_000270_590--Hb_002701_200 Hb_000270_590--Hb_000296_030 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020 Hb_007477_020 Hb_007477_020 Hb_003058_090--Hb_007477_020 Hb_003058_090--Hb_002874_100 Hb_003058_090--Hb_007426_100 Hb_003058_090--Hb_000296_030 Hb_001104_290 Hb_001104_290 Hb_003058_090--Hb_001104_290 Hb_007426_100--Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_007426_100--Hb_033153_030 Hb_000194_030 Hb_000194_030 Hb_007426_100--Hb_000194_030 Hb_000445_480 Hb_000445_480 Hb_007426_100--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020 Hb_000381_140--Hb_000224_070 Hb_000224_050 Hb_000224_050 Hb_000381_140--Hb_000224_050 Hb_000381_140--Hb_000905_130 Hb_002186_120 Hb_002186_120 Hb_000381_140--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_000381_140--Hb_000277_040 Hb_003050_210--Hb_000905_130 Hb_006603_010 Hb_006603_010 Hb_003050_210--Hb_006603_010 Hb_006846_050 Hb_006846_050 Hb_003050_210--Hb_006846_050 Hb_000375_210 Hb_000375_210 Hb_003050_210--Hb_000375_210 Hb_003050_210--Hb_002701_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0280303 0.0853664 1.4052 0.0339776 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0564266 0

CAGE analysis