Hb_001104_290

Information

Type transcription factor
Description TF Family: ERF
Location Contig1104: 358628-358861
Sequence    

Annotation

kegg
ID tcc:TCM_022481
description Dehydration-responsive element-binding protein 1B, putative
nr
ID XP_007027640.1
description Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
swissprot
ID A2X899
description Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. indica GN=DREB1G PE=3 SV=1
trembl
ID A0A061EUS7
description Dehydration-responsive element-binding protein 1B, putative OS=Theobroma cacao GN=TCM_022481 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dehydration-responsive element-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03272: 358574-358801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_290 0.0 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
2 Hb_000363_100 0.0054877366 - - -
3 Hb_002874_100 0.0700908834 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003252_030 0.0779587947 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_011689_090 0.0808261277 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
6 Hb_003747_080 0.0856077818 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_116679_010 0.0866960083 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
8 Hb_000203_110 0.0893730599 - - -
9 Hb_181191_010 0.0909634362 - - kinase, putative [Ricinus communis]
10 Hb_000445_480 0.0914387933 - - cytochrome P450, putative [Ricinus communis]
11 Hb_033153_030 0.0922741058 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
12 Hb_000027_010 0.0960840975 - - -
13 Hb_008727_090 0.1025936661 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
14 Hb_000203_120 0.1035777453 - - conserved hypothetical protein [Ricinus communis]
15 Hb_137821_010 0.1054387293 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
16 Hb_002894_020 0.1061073635 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
17 Hb_007472_060 0.1062081158 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
18 Hb_006275_080 0.1064515131 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
19 Hb_007426_100 0.1088087111 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000381_140 0.1095585847 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001104_290 Hb_001104_290 Hb_000363_100 Hb_000363_100 Hb_001104_290--Hb_000363_100 Hb_002874_100 Hb_002874_100 Hb_001104_290--Hb_002874_100 Hb_003252_030 Hb_003252_030 Hb_001104_290--Hb_003252_030 Hb_011689_090 Hb_011689_090 Hb_001104_290--Hb_011689_090 Hb_003747_080 Hb_003747_080 Hb_001104_290--Hb_003747_080 Hb_116679_010 Hb_116679_010 Hb_001104_290--Hb_116679_010 Hb_000363_100--Hb_002874_100 Hb_000363_100--Hb_003252_030 Hb_000363_100--Hb_011689_090 Hb_000445_480 Hb_000445_480 Hb_000363_100--Hb_000445_480 Hb_000363_100--Hb_116679_010 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002874_100--Hb_007426_100 Hb_002874_100--Hb_000445_480 Hb_002874_100--Hb_003252_030 Hb_003252_030--Hb_011689_090 Hb_003252_030--Hb_003747_080 Hb_000203_110 Hb_000203_110 Hb_003252_030--Hb_000203_110 Hb_011689_090--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_011689_090--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_011689_090--Hb_170597_010 Hb_006452_080 Hb_006452_080 Hb_011689_090--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_011689_090--Hb_003607_040 Hb_000027_010 Hb_000027_010 Hb_011689_090--Hb_000027_010 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_137821_010 Hb_137821_010 Hb_003747_080--Hb_137821_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_000527_090 Hb_000527_090 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_116679_010--Hb_170597_010 Hb_116679_010--Hb_006275_080 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_116679_010--Hb_000027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.59475 1.09907 37.4915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.585411 0

CAGE analysis