Hb_003252_030

Information

Type -
Description -
Location Contig3252: 71273-73345
Sequence    

Annotation

kegg
ID rcu:RCOM_1314890
description Auxin-induced protein 5NG4, putative
nr
ID XP_002518955.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q9LI65
description WAT1-related protein At3g30340 OS=Arabidopsis thaliana GN=At3g30340 PE=2 SV=1
trembl
ID B9RYY6
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1314890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g30340-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34265: 71650-72321 , PASA_asmbl_34266: 72358-73479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003252_030 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_001104_290 0.0779587947 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
3 Hb_000363_100 0.0798235328 - - -
4 Hb_002874_100 0.08422894 - - cytochrome P450, putative [Ricinus communis]
5 Hb_011689_090 0.0978390959 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
6 Hb_003747_080 0.1022468658 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_000203_110 0.1030644031 - - -
8 Hb_120496_010 0.1061831507 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
9 Hb_000296_030 0.1076678224 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
10 Hb_116679_010 0.1097432801 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
11 Hb_000381_140 0.111566435 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
12 Hb_000269_050 0.1139994628 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
13 Hb_181191_010 0.114503651 - - kinase, putative [Ricinus communis]
14 Hb_006275_080 0.1150636158 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
15 Hb_003058_090 0.1185572937 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
16 Hb_137821_010 0.1207903808 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
17 Hb_007441_320 0.1232145028 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
18 Hb_015085_010 0.1243931144 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
19 Hb_000224_070 0.1247362099 - - -
20 Hb_000027_010 0.1247746579 - - -

Gene co-expression network

sample Hb_003252_030 Hb_003252_030 Hb_001104_290 Hb_001104_290 Hb_003252_030--Hb_001104_290 Hb_000363_100 Hb_000363_100 Hb_003252_030--Hb_000363_100 Hb_002874_100 Hb_002874_100 Hb_003252_030--Hb_002874_100 Hb_011689_090 Hb_011689_090 Hb_003252_030--Hb_011689_090 Hb_003747_080 Hb_003747_080 Hb_003252_030--Hb_003747_080 Hb_000203_110 Hb_000203_110 Hb_003252_030--Hb_000203_110 Hb_001104_290--Hb_000363_100 Hb_001104_290--Hb_002874_100 Hb_001104_290--Hb_011689_090 Hb_001104_290--Hb_003747_080 Hb_116679_010 Hb_116679_010 Hb_001104_290--Hb_116679_010 Hb_000363_100--Hb_002874_100 Hb_000363_100--Hb_011689_090 Hb_000445_480 Hb_000445_480 Hb_000363_100--Hb_000445_480 Hb_000363_100--Hb_116679_010 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002874_100--Hb_007426_100 Hb_002874_100--Hb_000445_480 Hb_011689_090--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_011689_090--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_011689_090--Hb_170597_010 Hb_006452_080 Hb_006452_080 Hb_011689_090--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_011689_090--Hb_003607_040 Hb_000027_010 Hb_000027_010 Hb_011689_090--Hb_000027_010 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_137821_010 Hb_137821_010 Hb_003747_080--Hb_137821_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_000527_090 Hb_000527_090 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_000203_110--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_000203_110--Hb_000203_120 Hb_000203_110--Hb_008727_090 Hb_000203_110--Hb_120496_010 Hb_000203_110--Hb_137821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.27762 0.152183 5.78548 0 0.0585429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0641941 0

CAGE analysis