Hb_001998_100

Information

Type -
Description -
Location Contig1998: 139894-141272
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_100 0.0 - - -
2 Hb_153774_010 0.098355445 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003014_010 0.1323455189 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
4 Hb_009111_060 0.1450506672 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
5 Hb_009010_040 0.1574504715 - - Peptide transporter, putative [Ricinus communis]
6 Hb_031822_020 0.176987578 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
7 Hb_120496_010 0.1793388112 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
8 Hb_000203_110 0.1829522165 - - -
9 Hb_001277_390 0.1865774639 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
10 Hb_003360_050 0.1869915234 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000381_140 0.1871359201 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
12 Hb_000224_070 0.1900171887 - - -
13 Hb_181191_010 0.1926103563 - - kinase, putative [Ricinus communis]
14 Hb_000083_260 0.1927898921 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002186_120 0.1935525268 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
16 Hb_118941_010 0.193760341 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_003747_080 0.1938585983 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_001247_050 0.1943937967 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
19 Hb_018671_010 0.1946595487 - - -
20 Hb_000628_080 0.1948603678 - - hypothetical protein JCGZ_04283 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_100 Hb_001998_100 Hb_153774_010 Hb_153774_010 Hb_001998_100--Hb_153774_010 Hb_003014_010 Hb_003014_010 Hb_001998_100--Hb_003014_010 Hb_009111_060 Hb_009111_060 Hb_001998_100--Hb_009111_060 Hb_009010_040 Hb_009010_040 Hb_001998_100--Hb_009010_040 Hb_031822_020 Hb_031822_020 Hb_001998_100--Hb_031822_020 Hb_120496_010 Hb_120496_010 Hb_001998_100--Hb_120496_010 Hb_153774_010--Hb_009010_040 Hb_153774_010--Hb_009111_060 Hb_002759_270 Hb_002759_270 Hb_153774_010--Hb_002759_270 Hb_005356_050 Hb_005356_050 Hb_153774_010--Hb_005356_050 Hb_002925_040 Hb_002925_040 Hb_153774_010--Hb_002925_040 Hb_001892_040 Hb_001892_040 Hb_003014_010--Hb_001892_040 Hb_005976_030 Hb_005976_030 Hb_003014_010--Hb_005976_030 Hb_001591_020 Hb_001591_020 Hb_003014_010--Hb_001591_020 Hb_000258_010 Hb_000258_010 Hb_003014_010--Hb_000258_010 Hb_000733_170 Hb_000733_170 Hb_003014_010--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_003014_010--Hb_000530_080 Hb_009111_060--Hb_031822_020 Hb_000381_140 Hb_000381_140 Hb_009111_060--Hb_000381_140 Hb_002874_100 Hb_002874_100 Hb_009111_060--Hb_002874_100 Hb_000269_050 Hb_000269_050 Hb_009111_060--Hb_000269_050 Hb_000366_070 Hb_000366_070 Hb_009111_060--Hb_000366_070 Hb_000270_590 Hb_000270_590 Hb_009111_060--Hb_000270_590 Hb_009010_040--Hb_009111_060 Hb_009010_040--Hb_005356_050 Hb_002193_070 Hb_002193_070 Hb_009010_040--Hb_002193_070 Hb_009010_040--Hb_031822_020 Hb_001804_020 Hb_001804_020 Hb_031822_020--Hb_001804_020 Hb_002701_200 Hb_002701_200 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_001277_390 Hb_001277_390 Hb_120496_010--Hb_001277_390 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_118941_010 Hb_118941_010 Hb_120496_010--Hb_118941_010 Hb_120496_010--Hb_000224_070 Hb_120496_010--Hb_007441_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210305 0.374159 7.8289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.525418 0 0

CAGE analysis