Hb_002925_040

Information

Type desease resistance
Description Gene Name: TIR
Location Contig2925: 59938-77754
Sequence    

Annotation

kegg
ID cit:102611665
description TMV resistance protein N-like
nr
ID KDP45045.1
description hypothetical protein JCGZ_01545 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067LK27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30667: 62873-62977 , PASA_asmbl_30668: 63445-63968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002925_040 0.0 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
2 Hb_069384_010 0.0849953004 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
3 Hb_000186_090 0.0929676502 - - ACC oxidase 1 [Hevea brasiliensis]
4 Hb_011218_010 0.0940216049 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
5 Hb_004102_180 0.1000363782 - - zinc finger family protein [Populus trichocarpa]
6 Hb_007290_010 0.1059198843 - - cytochrome P450, putative [Ricinus communis]
7 Hb_007292_020 0.1102234224 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
8 Hb_004137_090 0.112082621 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
9 Hb_003561_020 0.1174456582 - - gulonolactone oxidase, putative [Ricinus communis]
10 Hb_000188_140 0.1201870498 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
11 Hb_000152_630 0.1210556143 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
12 Hb_000224_050 0.1230558111 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000175_600 0.1277779825 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
14 Hb_000710_130 0.1281699748 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_029508_040 0.1295628947 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_003464_100 0.1302610187 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
17 Hb_000224_020 0.1334708853 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
18 Hb_003777_150 0.1339584931 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
19 Hb_004474_020 0.1342477127 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_002277_020 0.134720822 - - Uncharacterized protein TCM_002409 [Theobroma cacao]

Gene co-expression network

sample Hb_002925_040 Hb_002925_040 Hb_069384_010 Hb_069384_010 Hb_002925_040--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_002925_040--Hb_000186_090 Hb_011218_010 Hb_011218_010 Hb_002925_040--Hb_011218_010 Hb_004102_180 Hb_004102_180 Hb_002925_040--Hb_004102_180 Hb_007290_010 Hb_007290_010 Hb_002925_040--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_002925_040--Hb_007292_020 Hb_069384_010--Hb_004102_180 Hb_069384_010--Hb_011218_010 Hb_069384_010--Hb_000186_090 Hb_069384_010--Hb_007290_010 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_029508_040 Hb_029508_040 Hb_000186_090--Hb_029508_040 Hb_000710_130 Hb_000710_130 Hb_000186_090--Hb_000710_130 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_002277_020 Hb_002277_020 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_011218_010--Hb_004102_180 Hb_007292_060 Hb_007292_060 Hb_011218_010--Hb_007292_060 Hb_000175_600 Hb_000175_600 Hb_011218_010--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_011218_010--Hb_000964_120 Hb_002326_090 Hb_002326_090 Hb_011218_010--Hb_002326_090 Hb_004102_180--Hb_000175_600 Hb_004102_180--Hb_007292_060 Hb_004102_180--Hb_007290_010 Hb_004102_180--Hb_002326_090 Hb_003561_020 Hb_003561_020 Hb_007290_010--Hb_003561_020 Hb_004137_090 Hb_004137_090 Hb_007290_010--Hb_004137_090 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_007290_010--Hb_011218_010 Hb_007292_020--Hb_004102_180 Hb_007292_020--Hb_011218_010 Hb_007292_020--Hb_000186_090 Hb_000224_050 Hb_000224_050 Hb_007292_020--Hb_000224_050 Hb_007292_020--Hb_007290_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00483178 0.161382 0.261407 2.17412 0.00732015 0.00694918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0268327 0.0193113 0.0299454

CAGE analysis