Hb_005356_050

Information

Type -
Description -
Location Contig5356: 60065-61559
Sequence    

Annotation

kegg
ID tcc:TCM_008493
description Senescence-associated gene 29
nr
ID XP_012085745.1
description PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
swissprot
ID Q9FY94
description Bidirectional sugar transporter SWEET15 OS=Arabidopsis thaliana GN=SWEET15 PE=2 SV=1
trembl
ID A0A067JSJ9
description Sugar transporter SWEET OS=Jatropha curcas GN=JCGZ_18015 PE=3 SV=1
Gene Ontology
ID GO:0016020
description bidirectional sugar transporter n3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47540: 60370-62274 , PASA_asmbl_47541: 60370-61660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_050 0.0 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
2 Hb_005183_020 0.144269904 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
3 Hb_002320_050 0.1461444953 - - clathrin assembly family protein [Populus trichocarpa]
4 Hb_001396_080 0.1468295645 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011930_090 0.1544532326 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
6 Hb_006061_020 0.1546507576 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
7 Hb_000710_130 0.1550877678 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_009851_120 0.1565366357 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
9 Hb_001269_440 0.1599780816 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
10 Hb_003090_250 0.1601848068 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000754_010 0.1602500449 - - unnamed protein product [Vitis vinifera]
12 Hb_006275_080 0.1605136914 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
13 Hb_000027_010 0.1612147119 - - -
14 Hb_002025_190 0.1623895705 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
15 Hb_029508_040 0.1626850586 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_000999_060 0.1628853442 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
17 Hb_074100_010 0.1642777951 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
18 Hb_019299_010 0.1654286696 - - zinc finger protein, putative [Ricinus communis]
19 Hb_170597_010 0.1664942638 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
20 Hb_006452_080 0.1678692724 - - Nodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_005356_050 Hb_005356_050 Hb_005183_020 Hb_005183_020 Hb_005356_050--Hb_005183_020 Hb_002320_050 Hb_002320_050 Hb_005356_050--Hb_002320_050 Hb_001396_080 Hb_001396_080 Hb_005356_050--Hb_001396_080 Hb_011930_090 Hb_011930_090 Hb_005356_050--Hb_011930_090 Hb_006061_020 Hb_006061_020 Hb_005356_050--Hb_006061_020 Hb_000710_130 Hb_000710_130 Hb_005356_050--Hb_000710_130 Hb_001053_100 Hb_001053_100 Hb_005183_020--Hb_001053_100 Hb_001269_440 Hb_001269_440 Hb_005183_020--Hb_001269_440 Hb_005183_020--Hb_001396_080 Hb_015085_010 Hb_015085_010 Hb_005183_020--Hb_015085_010 Hb_000086_160 Hb_000086_160 Hb_005183_020--Hb_000086_160 Hb_000032_160 Hb_000032_160 Hb_005183_020--Hb_000032_160 Hb_029508_040 Hb_029508_040 Hb_002320_050--Hb_029508_040 Hb_002925_040 Hb_002925_040 Hb_002320_050--Hb_002925_040 Hb_001810_040 Hb_001810_040 Hb_002320_050--Hb_001810_040 Hb_000186_090 Hb_000186_090 Hb_002320_050--Hb_000186_090 Hb_074100_010 Hb_074100_010 Hb_002320_050--Hb_074100_010 Hb_001396_080--Hb_001053_100 Hb_001396_080--Hb_000086_160 Hb_041067_010 Hb_041067_010 Hb_001396_080--Hb_041067_010 Hb_000527_090 Hb_000527_090 Hb_001396_080--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_001396_080--Hb_006452_080 Hb_019299_010 Hb_019299_010 Hb_011930_090--Hb_019299_010 Hb_012217_010 Hb_012217_010 Hb_011930_090--Hb_012217_010 Hb_000087_160 Hb_000087_160 Hb_011930_090--Hb_000087_160 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_009851_120 Hb_009851_120 Hb_011930_090--Hb_009851_120 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_000754_010 Hb_000754_010 Hb_006061_020--Hb_000754_010 Hb_000201_060 Hb_000201_060 Hb_006061_020--Hb_000201_060 Hb_003090_250 Hb_003090_250 Hb_006061_020--Hb_003090_250 Hb_004807_070 Hb_004807_070 Hb_006061_020--Hb_004807_070 Hb_006018_020 Hb_006018_020 Hb_006061_020--Hb_006018_020 Hb_000358_070 Hb_000358_070 Hb_006061_020--Hb_000358_070 Hb_000027_010 Hb_000027_010 Hb_000710_130--Hb_000027_010 Hb_000710_130--Hb_000186_090 Hb_006275_080 Hb_006275_080 Hb_000710_130--Hb_006275_080 Hb_000710_130--Hb_029508_040 Hb_170597_010 Hb_170597_010 Hb_000710_130--Hb_170597_010 Hb_002277_020 Hb_002277_020 Hb_000710_130--Hb_002277_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.06084 0.247345 9.06197 0.0348724 0.0307707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0 0.337391 0.0256159 0.249328

CAGE analysis