Hb_001396_080

Information

Type -
Description -
Location Contig1396: 47587-49677
Sequence    

Annotation

kegg
ID rcu:RCOM_1079280
description hypothetical protein
nr
ID XP_002514886.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001053_100 0.0829195876 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_000086_160 0.0939776143 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
4 Hb_041067_010 0.0986568011 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
5 Hb_005183_020 0.1004250673 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
6 Hb_000527_090 0.1085630168 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_006452_080 0.1134116303 - - Nodulin, putative [Ricinus communis]
8 Hb_002217_480 0.114099804 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
9 Hb_015085_010 0.1142469515 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
10 Hb_005463_120 0.1148753598 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_137821_010 0.1169393759 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
12 Hb_103931_010 0.1173144225 - - -
13 Hb_032280_010 0.1187625475 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_004148_030 0.1191188834 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
15 Hb_003090_250 0.1227694555 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
16 Hb_003747_080 0.1238294869 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_011689_090 0.123971703 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
18 Hb_000172_260 0.124759151 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
19 Hb_006275_080 0.1258464684 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
20 Hb_007472_060 0.1263979558 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_080 Hb_001396_080 Hb_001053_100 Hb_001053_100 Hb_001396_080--Hb_001053_100 Hb_000086_160 Hb_000086_160 Hb_001396_080--Hb_000086_160 Hb_041067_010 Hb_041067_010 Hb_001396_080--Hb_041067_010 Hb_005183_020 Hb_005183_020 Hb_001396_080--Hb_005183_020 Hb_000527_090 Hb_000527_090 Hb_001396_080--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_001396_080--Hb_006452_080 Hb_001053_100--Hb_000086_160 Hb_103931_010 Hb_103931_010 Hb_001053_100--Hb_103931_010 Hb_001053_100--Hb_041067_010 Hb_015085_010 Hb_015085_010 Hb_001053_100--Hb_015085_010 Hb_001053_100--Hb_005183_020 Hb_001269_440 Hb_001269_440 Hb_000086_160--Hb_001269_440 Hb_000086_160--Hb_103931_010 Hb_000027_010 Hb_000027_010 Hb_000086_160--Hb_000027_010 Hb_003212_030 Hb_003212_030 Hb_000086_160--Hb_003212_030 Hb_004148_030 Hb_004148_030 Hb_041067_010--Hb_004148_030 Hb_032280_010 Hb_032280_010 Hb_041067_010--Hb_032280_010 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_041067_010--Hb_015085_010 Hb_000164_250 Hb_000164_250 Hb_041067_010--Hb_000164_250 Hb_000172_260 Hb_000172_260 Hb_041067_010--Hb_000172_260 Hb_005183_020--Hb_001269_440 Hb_005183_020--Hb_015085_010 Hb_005183_020--Hb_000086_160 Hb_000032_160 Hb_000032_160 Hb_005183_020--Hb_000032_160 Hb_000527_090--Hb_006452_080 Hb_137821_010 Hb_137821_010 Hb_000527_090--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_000527_090--Hb_003747_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000048_120 Hb_000048_120 Hb_000527_090--Hb_000048_120 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006452_080--Hb_116679_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.22632 0.441776 26.5165 0.0181859 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20719 0.130382 0.0605808 0.0130617 0.134781

CAGE analysis