Hb_000086_160

Information

Type transcription factor
Description TF Family: NAC
Location Contig86: 118719-122261
Sequence    

Annotation

kegg
ID tcc:TCM_003998
description NAC domain protein, IPR003441
nr
ID XP_012085297.1
description PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
swissprot
ID Q84TE6
description NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2
trembl
ID R4NHJ5
description NAC transcription factor 009 OS=Jatropha curcas GN=JCGZ_17675 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 21 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60709: 118969-122120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_160 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
2 Hb_001053_100 0.0646472615 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_001269_440 0.0880146111 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
4 Hb_103931_010 0.0904598544 - - -
5 Hb_001396_080 0.0939776143 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000027_010 0.0943886979 - - -
7 Hb_003212_030 0.0982184184 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_007472_060 0.0987897929 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
9 Hb_002025_190 0.0993410203 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
10 Hb_041067_010 0.102382859 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
11 Hb_005183_020 0.1023998513 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
12 Hb_032280_010 0.1122823359 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
13 Hb_004148_030 0.1157368498 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
14 Hb_011689_090 0.1176175152 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
15 Hb_002217_480 0.1184945302 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
16 Hb_116679_010 0.1190987499 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
17 Hb_000628_100 0.1196368403 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
18 Hb_000164_250 0.1213036742 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
19 Hb_015085_010 0.1215170816 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
20 Hb_000172_260 0.1216182641 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_160 Hb_000086_160 Hb_001053_100 Hb_001053_100 Hb_000086_160--Hb_001053_100 Hb_001269_440 Hb_001269_440 Hb_000086_160--Hb_001269_440 Hb_103931_010 Hb_103931_010 Hb_000086_160--Hb_103931_010 Hb_001396_080 Hb_001396_080 Hb_000086_160--Hb_001396_080 Hb_000027_010 Hb_000027_010 Hb_000086_160--Hb_000027_010 Hb_003212_030 Hb_003212_030 Hb_000086_160--Hb_003212_030 Hb_001053_100--Hb_103931_010 Hb_041067_010 Hb_041067_010 Hb_001053_100--Hb_041067_010 Hb_015085_010 Hb_015085_010 Hb_001053_100--Hb_015085_010 Hb_001053_100--Hb_001396_080 Hb_005183_020 Hb_005183_020 Hb_001053_100--Hb_005183_020 Hb_002837_150 Hb_002837_150 Hb_001269_440--Hb_002837_150 Hb_002025_190 Hb_002025_190 Hb_001269_440--Hb_002025_190 Hb_001269_440--Hb_005183_020 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_001269_440--Hb_003212_030 Hb_103931_010--Hb_015085_010 Hb_000164_250 Hb_000164_250 Hb_103931_010--Hb_000164_250 Hb_103931_010--Hb_041067_010 Hb_032280_010 Hb_032280_010 Hb_103931_010--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_103931_010--Hb_000172_260 Hb_001396_080--Hb_041067_010 Hb_001396_080--Hb_005183_020 Hb_000527_090 Hb_000527_090 Hb_001396_080--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_001396_080--Hb_006452_080 Hb_006275_080 Hb_006275_080 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_000710_130 Hb_000710_130 Hb_000027_010--Hb_000710_130 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080 Hb_005373_030 Hb_005373_030 Hb_003212_030--Hb_005373_030 Hb_003212_030--Hb_002837_150 Hb_004617_010 Hb_004617_010 Hb_003212_030--Hb_004617_010 Hb_001013_070 Hb_001013_070 Hb_003212_030--Hb_001013_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.76457 0.198895 12.2243 0.0259732 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0467171 0 0.131953 0.0946319

CAGE analysis