Hb_002320_050

Information

Type -
Description -
Location Contig2320: 52389-53519
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09210g
description clathrin assembly family protein
nr
ID XP_006371337.1
description clathrin assembly family protein [Populus trichocarpa]
swissprot
ID Q9C502
description Putative clathrin assembly protein At1g33340 OS=Arabidopsis thaliana GN=At1g33340 PE=2 SV=1
trembl
ID U5FG03
description Clathrin assembly family protein OS=Populus trichocarpa GN=POPTR_0019s09210g PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at1g33340

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_050 0.0 - - clathrin assembly family protein [Populus trichocarpa]
2 Hb_029508_040 0.1291690313 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_002925_040 0.1423787539 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
4 Hb_001810_040 0.1453397817 - - -
5 Hb_000186_090 0.1458983142 - - ACC oxidase 1 [Hevea brasiliensis]
6 Hb_005356_050 0.1461444953 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
7 Hb_074100_010 0.1478877768 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
8 Hb_002277_020 0.1517715405 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
9 Hb_000579_210 0.1569409481 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
10 Hb_002640_030 0.1599970278 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
11 Hb_000710_130 0.1600358722 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_000230_220 0.1607869105 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006187_020 0.1626817241 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
14 Hb_069384_010 0.163827019 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
15 Hb_000429_080 0.1658534956 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000999_060 0.1670146757 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
17 Hb_001300_030 0.1684689728 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
18 Hb_000188_140 0.1694897171 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
19 Hb_009851_120 0.1698245922 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
20 Hb_001006_130 0.1713906789 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]

Gene co-expression network

sample Hb_002320_050 Hb_002320_050 Hb_029508_040 Hb_029508_040 Hb_002320_050--Hb_029508_040 Hb_002925_040 Hb_002925_040 Hb_002320_050--Hb_002925_040 Hb_001810_040 Hb_001810_040 Hb_002320_050--Hb_001810_040 Hb_000186_090 Hb_000186_090 Hb_002320_050--Hb_000186_090 Hb_005356_050 Hb_005356_050 Hb_002320_050--Hb_005356_050 Hb_074100_010 Hb_074100_010 Hb_002320_050--Hb_074100_010 Hb_029508_040--Hb_074100_010 Hb_029508_040--Hb_000186_090 Hb_002277_020 Hb_002277_020 Hb_029508_040--Hb_002277_020 Hb_000999_060 Hb_000999_060 Hb_029508_040--Hb_000999_060 Hb_000710_130 Hb_000710_130 Hb_029508_040--Hb_000710_130 Hb_002025_190 Hb_002025_190 Hb_029508_040--Hb_002025_190 Hb_069384_010 Hb_069384_010 Hb_002925_040--Hb_069384_010 Hb_002925_040--Hb_000186_090 Hb_011218_010 Hb_011218_010 Hb_002925_040--Hb_011218_010 Hb_004102_180 Hb_004102_180 Hb_002925_040--Hb_004102_180 Hb_007290_010 Hb_007290_010 Hb_002925_040--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_002925_040--Hb_007292_020 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_004308_020 Hb_004308_020 Hb_001810_040--Hb_004308_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_000186_090--Hb_069384_010 Hb_000186_090--Hb_000710_130 Hb_000186_090--Hb_074100_010 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_005183_020 Hb_005183_020 Hb_005356_050--Hb_005183_020 Hb_001396_080 Hb_001396_080 Hb_005356_050--Hb_001396_080 Hb_011930_090 Hb_011930_090 Hb_005356_050--Hb_011930_090 Hb_006061_020 Hb_006061_020 Hb_005356_050--Hb_006061_020 Hb_005356_050--Hb_000710_130 Hb_074100_010--Hb_000999_060 Hb_074100_010--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_074100_010--Hb_009851_120 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.447415 0.34984 3.13417 0 0.0202985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0871357 0 0.0635497 0.0137438 0.0706789

CAGE analysis