Hb_000470_060

Information

Type -
Description -
Location Contig470: 106368-117348
Sequence    

Annotation

kegg
ID pop:POPTR_0017s03520g
description cytochrome P450 family protein
nr
ID XP_012079290.1
description PREDICTED: abietadienol/abietadienal oxidase [Jatropha curcas]
swissprot
ID Q50EK6
description Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1
trembl
ID U5FM31
description Cytochrome P450 family protein OS=Populus trichocarpa GN=POPTR_0017s03520g PE=3 SV=1
Gene Ontology
ID GO:0004497
description abietadienol abietadienal oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44207: 106754-109263 , PASA_asmbl_44210: 117015-117467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000470_060 0.0 - - PREDICTED: abietadienol/abietadienal oxidase [Jatropha curcas]
2 Hb_000188_140 0.1349447308 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
3 Hb_180293_010 0.1354776047 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
4 Hb_002053_020 0.1431044142 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
5 Hb_000152_630 0.1439099109 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
6 Hb_000206_270 0.1440405082 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_000230_220 0.1464465059 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000087_160 0.1482963503 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_187906_010 0.1504594421 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
10 Hb_019299_010 0.1523496753 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000429_080 0.1537034974 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011930_090 0.1545410283 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
13 Hb_001810_040 0.155784414 - - -
14 Hb_005784_050 0.1572032405 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_147137_010 0.1574754293 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
16 Hb_000579_210 0.15796043 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_002277_020 0.1581334226 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
18 Hb_000920_120 0.1592910582 - - -
19 Hb_000025_150 0.1598973082 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
20 Hb_007441_100 0.1599792296 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]

Gene co-expression network

sample Hb_000470_060 Hb_000470_060 Hb_000188_140 Hb_000188_140 Hb_000470_060--Hb_000188_140 Hb_180293_010 Hb_180293_010 Hb_000470_060--Hb_180293_010 Hb_002053_020 Hb_002053_020 Hb_000470_060--Hb_002053_020 Hb_000152_630 Hb_000152_630 Hb_000470_060--Hb_000152_630 Hb_000206_270 Hb_000206_270 Hb_000470_060--Hb_000206_270 Hb_000230_220 Hb_000230_220 Hb_000470_060--Hb_000230_220 Hb_000188_140--Hb_000152_630 Hb_000188_140--Hb_000230_220 Hb_069384_010 Hb_069384_010 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000087_160 Hb_000087_160 Hb_000188_140--Hb_000087_160 Hb_084304_010 Hb_084304_010 Hb_000188_140--Hb_084304_010 Hb_000025_150 Hb_000025_150 Hb_180293_010--Hb_000025_150 Hb_019299_010 Hb_019299_010 Hb_180293_010--Hb_019299_010 Hb_187906_010 Hb_187906_010 Hb_180293_010--Hb_187906_010 Hb_009851_120 Hb_009851_120 Hb_180293_010--Hb_009851_120 Hb_011930_090 Hb_011930_090 Hb_180293_010--Hb_011930_090 Hb_001401_110 Hb_001401_110 Hb_180293_010--Hb_001401_110 Hb_002186_170 Hb_002186_170 Hb_002053_020--Hb_002186_170 Hb_000175_370 Hb_000175_370 Hb_002053_020--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002053_020--Hb_032299_020 Hb_005784_050 Hb_005784_050 Hb_002053_020--Hb_005784_050 Hb_000429_080 Hb_000429_080 Hb_002053_020--Hb_000429_080 Hb_023768_010 Hb_023768_010 Hb_002053_020--Hb_023768_010 Hb_000152_630--Hb_000230_220 Hb_000152_630--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_000152_630--Hb_004102_180 Hb_000152_630--Hb_000087_160 Hb_116349_080 Hb_116349_080 Hb_000152_630--Hb_116349_080 Hb_002030_190 Hb_002030_190 Hb_000206_270--Hb_002030_190 Hb_012217_010 Hb_012217_010 Hb_000206_270--Hb_012217_010 Hb_013399_060 Hb_013399_060 Hb_000206_270--Hb_013399_060 Hb_001418_050 Hb_001418_050 Hb_000206_270--Hb_001418_050 Hb_011344_050 Hb_011344_050 Hb_000206_270--Hb_011344_050 Hb_000098_230 Hb_000098_230 Hb_000206_270--Hb_000098_230 Hb_003197_050 Hb_003197_050 Hb_000230_220--Hb_003197_050 Hb_000230_220--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_000230_220--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_000230_220--Hb_025557_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638466 0.349166 0.271815 2.96085 0 0.0249599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.076524 0 0 0.15987

CAGE analysis