Hb_009111_060

Information

Type -
Description -
Location Contig9111: 102547-107174
Sequence    

Annotation

kegg
ID vvi:100248819
description probable cation transporter HKT7
nr
ID XP_012074414.1
description PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
swissprot
ID Q84TI7
description Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1
trembl
ID F6I5Q5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00150 PE=4 SV=1
Gene Ontology
ID GO:0008324
description sodium transporter hkt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62138: 106927-107166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009111_060 0.0 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
2 Hb_031822_020 0.1312717909 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
3 Hb_000381_140 0.133977972 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
4 Hb_002874_100 0.1373374094 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000269_050 0.1376577159 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
6 Hb_000366_070 0.1391327663 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
7 Hb_000270_590 0.1403201197 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
8 Hb_003252_030 0.1424844137 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_001998_100 0.1450506672 - - -
10 Hb_002925_040 0.1452967451 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
11 Hb_000363_100 0.1456160752 - - -
12 Hb_001104_290 0.1462039761 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
13 Hb_007426_100 0.1485023361 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003058_090 0.1488481856 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
15 Hb_009010_040 0.1502857592 - - Peptide transporter, putative [Ricinus communis]
16 Hb_000296_030 0.1556772059 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
17 Hb_002701_200 0.1590545423 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
18 Hb_006052_080 0.1609280866 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
19 Hb_011689_090 0.1611777657 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
20 Hb_000224_050 0.1612616632 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009111_060 Hb_009111_060 Hb_031822_020 Hb_031822_020 Hb_009111_060--Hb_031822_020 Hb_000381_140 Hb_000381_140 Hb_009111_060--Hb_000381_140 Hb_002874_100 Hb_002874_100 Hb_009111_060--Hb_002874_100 Hb_000269_050 Hb_000269_050 Hb_009111_060--Hb_000269_050 Hb_000366_070 Hb_000366_070 Hb_009111_060--Hb_000366_070 Hb_000270_590 Hb_000270_590 Hb_009111_060--Hb_000270_590 Hb_001804_020 Hb_001804_020 Hb_031822_020--Hb_001804_020 Hb_002701_200 Hb_002701_200 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_120496_010 Hb_120496_010 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_000381_140--Hb_000269_050 Hb_000381_140--Hb_000224_070 Hb_000224_050 Hb_000224_050 Hb_000381_140--Hb_000224_050 Hb_000905_130 Hb_000905_130 Hb_000381_140--Hb_000905_130 Hb_002186_120 Hb_002186_120 Hb_000381_140--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_000381_140--Hb_000277_040 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002874_100--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_002874_100--Hb_000363_100 Hb_001104_290 Hb_001104_290 Hb_002874_100--Hb_001104_290 Hb_000445_480 Hb_000445_480 Hb_002874_100--Hb_000445_480 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_003058_090 Hb_003058_090 Hb_000269_050--Hb_003058_090 Hb_000296_030 Hb_000296_030 Hb_000269_050--Hb_000296_030 Hb_000269_050--Hb_000224_070 Hb_000269_050--Hb_002874_100 Hb_000269_050--Hb_007426_100 Hb_000366_070--Hb_000269_050 Hb_000366_070--Hb_000270_590 Hb_000366_070--Hb_003058_090 Hb_000366_070--Hb_007426_100 Hb_000366_070--Hb_000381_140 Hb_003050_210 Hb_003050_210 Hb_000366_070--Hb_003050_210 Hb_000270_590--Hb_000905_130 Hb_000270_590--Hb_003050_210 Hb_000270_590--Hb_002701_200 Hb_000270_590--Hb_000296_030 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129682 0.191083 0.276937 5.5214 0.0381284 0.0128882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.131183 0.111207 0

CAGE analysis