Hb_005455_100

Information

Type -
Description -
Location Contig5455: 153506-154954
Sequence    

Annotation

kegg
ID rcu:RCOM_0878760
description amino acid transporter, putative
nr
ID XP_002527073.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9LHN7
description Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1
trembl
ID B9SM54
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0878760 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable polyamine transporter at3g13620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005455_100 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_010833_010 0.0987240799 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
3 Hb_003754_010 0.1103623917 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
4 Hb_153544_020 0.1105026212 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
5 Hb_150179_010 0.1124152859 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
6 Hb_004957_010 0.1135838731 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
7 Hb_001557_030 0.1147470381 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
8 Hb_006249_010 0.119112843 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
9 Hb_001887_010 0.1194420864 - - mta/sah nucleosidase, putative [Ricinus communis]
10 Hb_000107_240 0.123759777 - - organic anion transporter, putative [Ricinus communis]
11 Hb_002073_210 0.1246643498 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000307_160 0.1250188081 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
13 Hb_000868_020 0.1254861709 - - -
14 Hb_000997_220 0.1261564093 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
15 Hb_014834_100 0.126536044 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
16 Hb_010327_060 0.1282886665 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
17 Hb_011224_030 0.1285976649 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_103468_010 0.1302344875 - - protein binding protein, putative [Ricinus communis]
19 Hb_001308_010 0.1311914852 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001433_230 0.1312935195 - - PREDICTED: kinesin-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_005455_100 Hb_005455_100 Hb_010833_010 Hb_010833_010 Hb_005455_100--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_005455_100--Hb_003754_010 Hb_153544_020 Hb_153544_020 Hb_005455_100--Hb_153544_020 Hb_150179_010 Hb_150179_010 Hb_005455_100--Hb_150179_010 Hb_004957_010 Hb_004957_010 Hb_005455_100--Hb_004957_010 Hb_001557_030 Hb_001557_030 Hb_005455_100--Hb_001557_030 Hb_010833_010--Hb_153544_020 Hb_010833_010--Hb_003754_010 Hb_006651_020 Hb_006651_020 Hb_010833_010--Hb_006651_020 Hb_010833_010--Hb_004957_010 Hb_000997_220 Hb_000997_220 Hb_010833_010--Hb_000997_220 Hb_010327_060 Hb_010327_060 Hb_010833_010--Hb_010327_060 Hb_003754_010--Hb_004957_010 Hb_003754_010--Hb_153544_020 Hb_001308_010 Hb_001308_010 Hb_003754_010--Hb_001308_010 Hb_003754_010--Hb_000997_220 Hb_003754_010--Hb_006651_020 Hb_153544_020--Hb_004957_010 Hb_153544_020--Hb_006651_020 Hb_153544_020--Hb_010327_060 Hb_153544_020--Hb_000997_220 Hb_011224_030 Hb_011224_030 Hb_150179_010--Hb_011224_030 Hb_150179_010--Hb_001557_030 Hb_029584_030 Hb_029584_030 Hb_150179_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_150179_010--Hb_000664_010 Hb_007007_140 Hb_007007_140 Hb_150179_010--Hb_007007_140 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_004957_010--Hb_001308_010 Hb_004957_010--Hb_000997_220 Hb_004957_010--Hb_006651_020 Hb_014834_100 Hb_014834_100 Hb_001557_030--Hb_014834_100 Hb_001557_030--Hb_011224_030 Hb_001557_030--Hb_007007_140 Hb_001887_010 Hb_001887_010 Hb_001557_030--Hb_001887_010 Hb_001557_030--Hb_029584_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.284258 4.16501 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0511382 0.0479741 0 0.534128

CAGE analysis