Hb_000733_150

Information

Type -
Description -
Location Contig733: 135172-138069
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06140g
description POPTRDRAFT_832569; hypothetical protein
nr
ID XP_011036947.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
swissprot
ID Q9M331
description Protein NRT1/ PTR FAMILY 5.7 OS=Arabidopsis thaliana GN=NPF5.7 PE=2 SV=2
trembl
ID B9HMN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06140g PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_150 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
2 Hb_002793_080 0.0094206616 - - ribonuclease t2, putative [Ricinus communis]
3 Hb_036537_010 0.1508869026 - - ATP binding protein, putative [Ricinus communis]
4 Hb_051055_010 0.1614292481 - - -
5 Hb_020712_050 0.2078549454 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
6 Hb_000042_180 0.227966929 - - -
7 Hb_034905_010 0.2464869345 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
8 Hb_003058_250 0.2587148313 - - hypothetical protein RCOM_0006440 [Ricinus communis]
9 Hb_176472_010 0.2916335991 - - BnaC01g33060D [Brassica napus]
10 Hb_000003_850 0.2994473651 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
11 Hb_003360_050 0.3488175863 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_002193_070 0.3727974548 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_117807_030 0.3800234429 - - Protein MCM10 [Gossypium arboreum]
14 Hb_001163_140 0.3807188216 - - -
15 Hb_004970_210 0.383115243 - - -
16 Hb_002316_010 0.3928655857 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
17 Hb_168319_020 0.3952872189 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009449_050 0.3981030372 - - PREDICTED: serine/threonine-protein kinase HT1-like [Nelumbo nucifera]
19 Hb_153774_010 0.3985346855 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001141_290 0.4118138714 - - -

Gene co-expression network

sample Hb_000733_150 Hb_000733_150 Hb_002793_080 Hb_002793_080 Hb_000733_150--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_000733_150--Hb_036537_010 Hb_051055_010 Hb_051055_010 Hb_000733_150--Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_000733_150--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_000733_150--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_000733_150--Hb_034905_010 Hb_002793_080--Hb_036537_010 Hb_002793_080--Hb_051055_010 Hb_002793_080--Hb_020712_050 Hb_002793_080--Hb_000042_180 Hb_002793_080--Hb_034905_010 Hb_036537_010--Hb_051055_010 Hb_176472_010 Hb_176472_010 Hb_036537_010--Hb_176472_010 Hb_004316_090 Hb_004316_090 Hb_036537_010--Hb_004316_090 Hb_036537_010--Hb_020712_050 Hb_051055_010--Hb_020712_050 Hb_000003_850 Hb_000003_850 Hb_051055_010--Hb_000003_850 Hb_003058_250 Hb_003058_250 Hb_051055_010--Hb_003058_250 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_020712_050--Hb_000042_180 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_002193_070 Hb_002193_070 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_034905_010--Hb_176472_010 Hb_117807_030 Hb_117807_030 Hb_034905_010--Hb_117807_030 Hb_034905_010--Hb_000042_180 Hb_168319_020 Hb_168319_020 Hb_034905_010--Hb_168319_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0440925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.034042 0 0

CAGE analysis