Hb_000003_850

Information

Type -
Description -
Location Contig3: 785854-789004
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10800g
description POPTRDRAFT_835927; hypothetical protein
nr
ID XP_012071611.1
description PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IM62
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_850 0.0 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
2 Hb_001163_140 0.2494508866 - - -
3 Hb_020712_050 0.2706043586 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
4 Hb_000042_180 0.272867981 - - -
5 Hb_003058_250 0.2941508139 - - hypothetical protein RCOM_0006440 [Ricinus communis]
6 Hb_002793_080 0.2951993853 - - ribonuclease t2, putative [Ricinus communis]
7 Hb_051055_010 0.2970486686 - - -
8 Hb_000733_150 0.2994473651 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
9 Hb_003360_050 0.3046604996 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_002193_070 0.308589236 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000345_070 0.3174629204 rubber biosynthesis Gene Name: SRPP6 -
12 Hb_001141_290 0.3190074315 - - -
13 Hb_001804_030 0.3397760593 - - kinase, putative [Ricinus communis]
14 Hb_168319_020 0.3418445082 - - conserved hypothetical protein [Ricinus communis]
15 Hb_034905_010 0.3456876121 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
16 Hb_007120_040 0.3501468084 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023301_010 0.3507843238 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
18 Hb_000532_090 0.3509048896 - - ATPase [delta proteobacterium MLMS-1]
19 Hb_019863_100 0.3537736 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
20 Hb_034299_070 0.3542968524 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_850 Hb_000003_850 Hb_001163_140 Hb_001163_140 Hb_000003_850--Hb_001163_140 Hb_020712_050 Hb_020712_050 Hb_000003_850--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_000003_850--Hb_000042_180 Hb_003058_250 Hb_003058_250 Hb_000003_850--Hb_003058_250 Hb_002793_080 Hb_002793_080 Hb_000003_850--Hb_002793_080 Hb_051055_010 Hb_051055_010 Hb_000003_850--Hb_051055_010 Hb_012565_010 Hb_012565_010 Hb_001163_140--Hb_012565_010 Hb_002193_070 Hb_002193_070 Hb_001163_140--Hb_002193_070 Hb_001163_140--Hb_000042_180 Hb_001157_210 Hb_001157_210 Hb_001163_140--Hb_001157_210 Hb_002675_170 Hb_002675_170 Hb_001163_140--Hb_002675_170 Hb_020712_050--Hb_051055_010 Hb_020712_050--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_020712_050--Hb_000733_150 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_020712_050--Hb_000042_180 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_000042_180--Hb_002793_080 Hb_000042_180--Hb_000733_150 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_003058_250--Hb_000733_150 Hb_003058_250--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_003058_250--Hb_036537_010 Hb_003058_250--Hb_051055_010 Hb_009449_050 Hb_009449_050 Hb_003058_250--Hb_009449_050 Hb_002793_080--Hb_000733_150 Hb_002793_080--Hb_036537_010 Hb_002793_080--Hb_051055_010 Hb_034905_010 Hb_034905_010 Hb_002793_080--Hb_034905_010 Hb_051055_010--Hb_000733_150 Hb_051055_010--Hb_036537_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022145 0 0 0.32574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0319134 0.118735 0.0127841 0

CAGE analysis