Hb_001157_210

Information

Type -
Description -
Location Contig1157: 170760-170993
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04550g
description hypothetical protein
nr
ID KDO63004.1
description hypothetical protein CISIN_1g038260mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067F6H8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038260mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04725: 151832-169821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_210 0.0 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
2 Hb_001153_070 0.1680667829 - - -
3 Hb_012565_010 0.2006753424 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
4 Hb_000617_300 0.2064147597 - - RALFL33, putative [Ricinus communis]
5 Hb_000087_010 0.2069702067 - - mta/sah nucleosidase, putative [Ricinus communis]
6 Hb_011169_010 0.2136214435 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_000345_060 0.2139708779 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
8 Hb_003411_120 0.2163805247 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
9 Hb_005455_100 0.2215345369 - - amino acid transporter, putative [Ricinus communis]
10 Hb_003020_200 0.2218678798 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
11 Hb_001635_010 0.2242680829 - - -
12 Hb_001741_110 0.2250812259 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
13 Hb_000995_020 0.2267174187 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003813_010 0.2284894225 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
15 Hb_102772_010 0.2353859037 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000622_230 0.2362269296 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
17 Hb_029508_020 0.2365061563 - - -
18 Hb_000541_030 0.2368896037 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000115_210 0.2372965369 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
20 Hb_091537_010 0.2384314984 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001157_210 Hb_001157_210 Hb_001153_070 Hb_001153_070 Hb_001157_210--Hb_001153_070 Hb_012565_010 Hb_012565_010 Hb_001157_210--Hb_012565_010 Hb_000617_300 Hb_000617_300 Hb_001157_210--Hb_000617_300 Hb_000087_010 Hb_000087_010 Hb_001157_210--Hb_000087_010 Hb_011169_010 Hb_011169_010 Hb_001157_210--Hb_011169_010 Hb_000345_060 Hb_000345_060 Hb_001157_210--Hb_000345_060 Hb_003411_120 Hb_003411_120 Hb_001153_070--Hb_003411_120 Hb_091537_010 Hb_091537_010 Hb_001153_070--Hb_091537_010 Hb_001102_310 Hb_001102_310 Hb_001153_070--Hb_001102_310 Hb_029508_020 Hb_029508_020 Hb_001153_070--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001153_070--Hb_000541_030 Hb_002675_170 Hb_002675_170 Hb_012565_010--Hb_002675_170 Hb_002193_070 Hb_002193_070 Hb_012565_010--Hb_002193_070 Hb_011900_040 Hb_011900_040 Hb_012565_010--Hb_011900_040 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_012565_010--Hb_000617_300 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_003371_030 Hb_003371_030 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_004884_050 Hb_004884_050 Hb_000087_010--Hb_004884_050 Hb_001741_110 Hb_001741_110 Hb_000087_010--Hb_001741_110 Hb_000087_010--Hb_011169_010 Hb_000115_210 Hb_000115_210 Hb_000087_010--Hb_000115_210 Hb_002374_540 Hb_002374_540 Hb_000087_010--Hb_002374_540 Hb_006889_010 Hb_006889_010 Hb_000087_010--Hb_006889_010 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_011169_010--Hb_003020_200 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_003906_020 Hb_003906_020 Hb_000345_060--Hb_003906_020 Hb_001635_010 Hb_001635_010 Hb_000345_060--Hb_001635_010 Hb_000179_120 Hb_000179_120 Hb_000345_060--Hb_000179_120 Hb_014720_100 Hb_014720_100 Hb_000345_060--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_000345_060--Hb_000367_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.729672 0 1.46542 30.0037 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.780582 2.48852 0.754704 0 1.6031

CAGE analysis