Hb_000345_060

Information

Type -
Description -
Location Contig345: 83617-92011
Sequence    

Annotation

kegg
ID rcu:RCOM_1433280
description Rubber elongation factor protein, putative
nr
ID XP_012089011.1
description PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
swissprot
ID O82803
description Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1
trembl
ID A0A067JVA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23312 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35978: 83499-85119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_060 0.0 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
2 Hb_003906_020 0.2006954202 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
3 Hb_001635_010 0.2035469797 - - -
4 Hb_001157_210 0.2139708779 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
5 Hb_000179_120 0.2320371844 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
6 Hb_014720_100 0.238102806 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
7 Hb_000367_110 0.2623002163 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
8 Hb_003020_200 0.2625937082 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
9 Hb_012565_010 0.2629228282 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
10 Hb_002316_010 0.2634295239 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
11 Hb_009178_050 0.2652163485 - - Elongation factor 1-alpha, putative [Ricinus communis]
12 Hb_000157_050 0.2672168669 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005529_020 0.2684545065 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
14 Hb_000087_010 0.2702907188 - - mta/sah nucleosidase, putative [Ricinus communis]
15 Hb_001741_110 0.2706536781 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
16 Hb_004308_010 0.2727316004 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
17 Hb_178968_040 0.2731201204 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001514_260 0.2732257193 - - -
19 Hb_017002_010 0.27428607 - - PREDICTED: expansin-A15-like [Jatropha curcas]
20 Hb_002582_080 0.2745742204 - - -

Gene co-expression network

sample Hb_000345_060 Hb_000345_060 Hb_003906_020 Hb_003906_020 Hb_000345_060--Hb_003906_020 Hb_001635_010 Hb_001635_010 Hb_000345_060--Hb_001635_010 Hb_001157_210 Hb_001157_210 Hb_000345_060--Hb_001157_210 Hb_000179_120 Hb_000179_120 Hb_000345_060--Hb_000179_120 Hb_014720_100 Hb_014720_100 Hb_000345_060--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_000345_060--Hb_000367_110 Hb_002641_170 Hb_002641_170 Hb_003906_020--Hb_002641_170 Hb_000635_020 Hb_000635_020 Hb_003906_020--Hb_000635_020 Hb_000995_020 Hb_000995_020 Hb_003906_020--Hb_000995_020 Hb_003906_020--Hb_014720_100 Hb_003906_020--Hb_000367_110 Hb_000157_050 Hb_000157_050 Hb_001635_010--Hb_000157_050 Hb_017002_010 Hb_017002_010 Hb_001635_010--Hb_017002_010 Hb_001635_010--Hb_014720_100 Hb_002316_010 Hb_002316_010 Hb_001635_010--Hb_002316_010 Hb_000258_060 Hb_000258_060 Hb_001635_010--Hb_000258_060 Hb_001153_070 Hb_001153_070 Hb_001157_210--Hb_001153_070 Hb_012565_010 Hb_012565_010 Hb_001157_210--Hb_012565_010 Hb_000617_300 Hb_000617_300 Hb_001157_210--Hb_000617_300 Hb_000087_010 Hb_000087_010 Hb_001157_210--Hb_000087_010 Hb_011169_010 Hb_011169_010 Hb_001157_210--Hb_011169_010 Hb_000217_010 Hb_000217_010 Hb_000179_120--Hb_000217_010 Hb_034299_070 Hb_034299_070 Hb_000179_120--Hb_034299_070 Hb_000483_400 Hb_000483_400 Hb_000179_120--Hb_000483_400 Hb_002572_030 Hb_002572_030 Hb_000179_120--Hb_002572_030 Hb_023301_010 Hb_023301_010 Hb_000179_120--Hb_023301_010 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_000367_110--Hb_002641_170 Hb_000347_520 Hb_000347_520 Hb_000367_110--Hb_000347_520 Hb_000188_080 Hb_000188_080 Hb_000367_110--Hb_000188_080 Hb_004308_010 Hb_004308_010 Hb_000367_110--Hb_004308_010 Hb_004218_100 Hb_004218_100 Hb_000367_110--Hb_004218_100 Hb_003988_020 Hb_003988_020 Hb_000367_110--Hb_003988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6285 1.70224 27.1653 698.724 1.50797 3.95538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.958 27.005 40.8732 1.71839 22.9659

CAGE analysis