Hb_000258_060

Information

Type -
Description -
Location Contig258: 33779-34129
Sequence    

Annotation

kegg
ID rcu:RCOM_1057740
description hypothetical protein
nr
ID XP_002528690.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRS7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1057740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26792: 33717-34114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001635_010 0.1982834509 - - -
3 Hb_008695_220 0.2041941031 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
4 Hb_003894_020 0.2117525763 - - plant sec1, putative [Ricinus communis]
5 Hb_001989_100 0.2159927653 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
6 Hb_000796_020 0.2221681252 - - ADP-ribosylation factor [Phaseolus vulgaris]
7 Hb_019863_100 0.2226835414 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
8 Hb_122636_010 0.2261782084 - - dienelactone hydrolase family protein [Populus trichocarpa]
9 Hb_004079_050 0.226194938 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
10 Hb_147745_010 0.2294449995 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
11 Hb_029920_020 0.2298481162 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
12 Hb_000164_010 0.230004478 - - small heat-shock protein, putative [Ricinus communis]
13 Hb_002205_170 0.2323763028 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
14 Hb_000217_010 0.2337442857 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
15 Hb_000028_260 0.2371703428 - - hypothetical protein glysoja_041948 [Glycine soja]
16 Hb_000496_110 0.2372362127 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
17 Hb_000300_410 0.2394832957 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
18 Hb_000742_030 0.2446505006 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
19 Hb_005021_010 0.2467072739 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_000192_020 0.2497072876 - - hypothetical protein JCGZ_17351 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_060 Hb_000258_060 Hb_001635_010 Hb_001635_010 Hb_000258_060--Hb_001635_010 Hb_008695_220 Hb_008695_220 Hb_000258_060--Hb_008695_220 Hb_003894_020 Hb_003894_020 Hb_000258_060--Hb_003894_020 Hb_001989_100 Hb_001989_100 Hb_000258_060--Hb_001989_100 Hb_000796_020 Hb_000796_020 Hb_000258_060--Hb_000796_020 Hb_019863_100 Hb_019863_100 Hb_000258_060--Hb_019863_100 Hb_000157_050 Hb_000157_050 Hb_001635_010--Hb_000157_050 Hb_017002_010 Hb_017002_010 Hb_001635_010--Hb_017002_010 Hb_014720_100 Hb_014720_100 Hb_001635_010--Hb_014720_100 Hb_002316_010 Hb_002316_010 Hb_001635_010--Hb_002316_010 Hb_000345_060 Hb_000345_060 Hb_001635_010--Hb_000345_060 Hb_007574_040 Hb_007574_040 Hb_008695_220--Hb_007574_040 Hb_000950_030 Hb_000950_030 Hb_008695_220--Hb_000950_030 Hb_008695_220--Hb_017002_010 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_008695_220--Hb_014720_100 Hb_003894_020--Hb_000455_070 Hb_000094_200 Hb_000094_200 Hb_003894_020--Hb_000094_200 Hb_122636_010 Hb_122636_010 Hb_003894_020--Hb_122636_010 Hb_001999_100 Hb_001999_100 Hb_003894_020--Hb_001999_100 Hb_003894_020--Hb_000796_020 Hb_004162_060 Hb_004162_060 Hb_003894_020--Hb_004162_060 Hb_000300_410 Hb_000300_410 Hb_001989_100--Hb_000300_410 Hb_012707_010 Hb_012707_010 Hb_001989_100--Hb_012707_010 Hb_001989_100--Hb_000950_030 Hb_020805_140 Hb_020805_140 Hb_001989_100--Hb_020805_140 Hb_000496_110 Hb_000496_110 Hb_001989_100--Hb_000496_110 Hb_005976_010 Hb_005976_010 Hb_001989_100--Hb_005976_010 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000776_060 Hb_000776_060 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090 Hb_000210_100 Hb_000210_100 Hb_019863_100--Hb_000210_100 Hb_019863_100--Hb_004162_060 Hb_004204_110 Hb_004204_110 Hb_019863_100--Hb_004204_110 Hb_019863_100--Hb_002316_010 Hb_000164_010 Hb_000164_010 Hb_019863_100--Hb_000164_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.83191 0.546677 11.9775 0.110748 0.651472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.779435 2.65438 1.87236 0.27139 2.7302

CAGE analysis