Hb_004204_110

Information

Type -
Description -
Location Contig4204: 69927-71369
Sequence    

Annotation

kegg
ID tcc:TCM_014167
description UDP-glucose 6-dehydrogenase family protein isoform 1
nr
ID XP_012080355.1
description PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
swissprot
ID Q96558
description UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1
trembl
ID A0A067KGE2
description UDP-glucose 6-dehydrogenase OS=Jatropha curcas GN=JCGZ_11696 PE=3 SV=1
Gene Ontology
ID GO:0003979
description udp-glucose 6-dehydrogenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_110 0.0 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
2 Hb_004429_080 0.1951831334 - - RNA binding protein, putative [Ricinus communis]
3 Hb_003878_050 0.198316797 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_000086_290 0.2012389556 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
5 Hb_000210_100 0.2045569662 - - pepsin A, putative [Ricinus communis]
6 Hb_001902_200 0.2197385033 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
7 Hb_006711_090 0.2274992196 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
8 Hb_019863_100 0.2277038693 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
9 Hb_009252_020 0.2304668115 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
10 Hb_001904_050 0.2312388988 - - alpha-tubulin 1 [Hevea brasiliensis]
11 Hb_000742_160 0.2323865705 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
12 Hb_105959_010 0.2342572826 - - asparagine synthetase, putative [Ricinus communis]
13 Hb_000776_060 0.2393006396 - - histone H4 [Zea mays]
14 Hb_004453_070 0.2406284713 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
15 Hb_029920_020 0.2419283213 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
16 Hb_000477_040 0.2426396571 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001454_100 0.2427747461 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
18 Hb_007810_090 0.2434618001 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
19 Hb_004109_210 0.2447180079 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
20 Hb_026889_040 0.2457378685 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_110 Hb_004204_110 Hb_004429_080 Hb_004429_080 Hb_004204_110--Hb_004429_080 Hb_003878_050 Hb_003878_050 Hb_004204_110--Hb_003878_050 Hb_000086_290 Hb_000086_290 Hb_004204_110--Hb_000086_290 Hb_000210_100 Hb_000210_100 Hb_004204_110--Hb_000210_100 Hb_001902_200 Hb_001902_200 Hb_004204_110--Hb_001902_200 Hb_006711_090 Hb_006711_090 Hb_004204_110--Hb_006711_090 Hb_009252_020 Hb_009252_020 Hb_004429_080--Hb_009252_020 Hb_000742_020 Hb_000742_020 Hb_004429_080--Hb_000742_020 Hb_000023_310 Hb_000023_310 Hb_004429_080--Hb_000023_310 Hb_031527_110 Hb_031527_110 Hb_004429_080--Hb_031527_110 Hb_007441_080 Hb_007441_080 Hb_004429_080--Hb_007441_080 Hb_013394_050 Hb_013394_050 Hb_004429_080--Hb_013394_050 Hb_026889_040 Hb_026889_040 Hb_003878_050--Hb_026889_040 Hb_000477_040 Hb_000477_040 Hb_003878_050--Hb_000477_040 Hb_000703_280 Hb_000703_280 Hb_003878_050--Hb_000703_280 Hb_004158_020 Hb_004158_020 Hb_003878_050--Hb_004158_020 Hb_001369_630 Hb_001369_630 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_000086_290--Hb_001902_200 Hb_000086_290--Hb_003878_050 Hb_000011_310 Hb_000011_310 Hb_000086_290--Hb_000011_310 Hb_048384_010 Hb_048384_010 Hb_000086_290--Hb_048384_010 Hb_000260_280 Hb_000260_280 Hb_000086_290--Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000086_290--Hb_032972_010 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_025466_020 Hb_025466_020 Hb_000210_100--Hb_025466_020 Hb_069355_010 Hb_069355_010 Hb_000210_100--Hb_069355_010 Hb_000210_100--Hb_000260_280 Hb_000210_100--Hb_003878_050 Hb_020805_140 Hb_020805_140 Hb_000210_100--Hb_020805_140 Hb_001366_170 Hb_001366_170 Hb_001902_200--Hb_001366_170 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001902_200--Hb_001369_630 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_002007_320 Hb_002007_320 Hb_006711_090--Hb_002007_320 Hb_000062_090 Hb_000062_090 Hb_006711_090--Hb_000062_090 Hb_006711_090--Hb_000935_040 Hb_001904_050 Hb_001904_050 Hb_006711_090--Hb_001904_050 Hb_006711_090--Hb_004158_020 Hb_188281_030 Hb_188281_030 Hb_006711_090--Hb_188281_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0286595 0.040412 0.187257 0.472612 0 0.0144573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0326577 0.102769 0.240985 0.0307826 0.0536601

CAGE analysis