Hb_004429_080

Information

Type -
Description -
Location Contig4429: 50488-54159
Sequence    

Annotation

kegg
ID rcu:RCOM_1620530
description RNA binding protein, putative
nr
ID XP_002512070.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LMX5
description Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1
trembl
ID B9RED1
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1620530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42739: 50246-54349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_080 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_009252_020 0.148472855 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
3 Hb_000742_020 0.1652594221 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_000023_310 0.1729584381 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
5 Hb_031527_110 0.176553076 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
6 Hb_007441_080 0.1786460668 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
7 Hb_013394_050 0.1815764441 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
8 Hb_001904_050 0.1848799456 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_000935_040 0.1880972326 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_000465_320 0.1899149354 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
11 Hb_007044_090 0.1908644535 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
12 Hb_006711_090 0.1921698746 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
13 Hb_000742_160 0.1934535348 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
14 Hb_000776_060 0.194340988 - - histone H4 [Zea mays]
15 Hb_106552_040 0.195021064 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004204_110 0.1951831334 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
17 Hb_000244_170 0.1960760974 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
18 Hb_001188_100 0.1964463267 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
19 Hb_000878_110 0.1992765915 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_031022_020 0.2037773273 - - -

Gene co-expression network

sample Hb_004429_080 Hb_004429_080 Hb_009252_020 Hb_009252_020 Hb_004429_080--Hb_009252_020 Hb_000742_020 Hb_000742_020 Hb_004429_080--Hb_000742_020 Hb_000023_310 Hb_000023_310 Hb_004429_080--Hb_000023_310 Hb_031527_110 Hb_031527_110 Hb_004429_080--Hb_031527_110 Hb_007441_080 Hb_007441_080 Hb_004429_080--Hb_007441_080 Hb_013394_050 Hb_013394_050 Hb_004429_080--Hb_013394_050 Hb_001188_100 Hb_001188_100 Hb_009252_020--Hb_001188_100 Hb_009252_020--Hb_000742_020 Hb_003549_080 Hb_003549_080 Hb_009252_020--Hb_003549_080 Hb_001904_050 Hb_001904_050 Hb_009252_020--Hb_001904_050 Hb_011139_040 Hb_011139_040 Hb_009252_020--Hb_011139_040 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_002615_030 Hb_002615_030 Hb_000023_310--Hb_002615_030 Hb_002007_320 Hb_002007_320 Hb_000023_310--Hb_002007_320 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_007590_090 Hb_007590_090 Hb_000023_310--Hb_007590_090 Hb_003371_070 Hb_003371_070 Hb_000023_310--Hb_003371_070 Hb_002174_040 Hb_002174_040 Hb_031527_110--Hb_002174_040 Hb_031527_110--Hb_001904_050 Hb_000962_070 Hb_000962_070 Hb_031527_110--Hb_000962_070 Hb_000181_350 Hb_000181_350 Hb_031527_110--Hb_000181_350 Hb_042083_040 Hb_042083_040 Hb_031527_110--Hb_042083_040 Hb_031527_110--Hb_007441_080 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_013394_050--Hb_000069_640 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_000197_020 Hb_000197_020 Hb_013394_050--Hb_000197_020 Hb_013394_050--Hb_000244_170 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.640387 2.23485 4.35494 7.69694 0.0579617 1.34945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43136 1.87674 4.46949 0.653516 2.90699

CAGE analysis