Hb_002174_040

Information

Type -
Description -
Location Contig2174: 49191-51418
Sequence    

Annotation

kegg
ID tcc:TCM_038304
description DNAJ heat shock family protein
nr
ID XP_007013743.1
description DNAJ heat shock family protein [Theobroma cacao]
swissprot
ID Q5R8J8
description DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1
trembl
ID A0A061GQC8
description DNAJ heat shock family protein OS=Theobroma cacao GN=TCM_038304 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj heat shock family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22469: 49544-50073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002174_040 0.0 - - DNAJ heat shock family protein [Theobroma cacao]
2 Hb_031527_110 0.1104057538 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
3 Hb_012573_050 0.1120528912 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
4 Hb_000181_350 0.1149801952 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
5 Hb_001663_040 0.1164890075 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
6 Hb_011224_100 0.1196842935 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002184_090 0.1207462839 - - DNA binding protein, putative [Ricinus communis]
8 Hb_007101_110 0.1300184918 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
9 Hb_000244_170 0.1300664304 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
10 Hb_000721_030 0.1314965725 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
11 Hb_012339_010 0.1327443124 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000742_020 0.1328628289 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_011606_020 0.1347309097 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
14 Hb_001606_060 0.137611203 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000638_070 0.137724139 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
16 Hb_000116_130 0.1383704097 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
17 Hb_004116_020 0.1384198556 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
18 Hb_000136_140 0.1386141768 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
19 Hb_000244_180 0.1391152135 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011926_040 0.1411019805 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002174_040 Hb_002174_040 Hb_031527_110 Hb_031527_110 Hb_002174_040--Hb_031527_110 Hb_012573_050 Hb_012573_050 Hb_002174_040--Hb_012573_050 Hb_000181_350 Hb_000181_350 Hb_002174_040--Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_002174_040--Hb_001663_040 Hb_011224_100 Hb_011224_100 Hb_002174_040--Hb_011224_100 Hb_002184_090 Hb_002184_090 Hb_002174_040--Hb_002184_090 Hb_001904_050 Hb_001904_050 Hb_031527_110--Hb_001904_050 Hb_000962_070 Hb_000962_070 Hb_031527_110--Hb_000962_070 Hb_031527_110--Hb_000181_350 Hb_042083_040 Hb_042083_040 Hb_031527_110--Hb_042083_040 Hb_007441_080 Hb_007441_080 Hb_031527_110--Hb_007441_080 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_000181_350--Hb_001663_040 Hb_007101_110 Hb_007101_110 Hb_000181_350--Hb_007101_110 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_001663_040--Hb_012573_050 Hb_001663_040--Hb_000116_130 Hb_011606_020 Hb_011606_020 Hb_011224_100--Hb_011606_020 Hb_011224_100--Hb_000116_130 Hb_021495_020 Hb_021495_020 Hb_011224_100--Hb_021495_020 Hb_043792_040 Hb_043792_040 Hb_011224_100--Hb_043792_040 Hb_011224_100--Hb_012573_050 Hb_001195_060 Hb_001195_060 Hb_002184_090--Hb_001195_060 Hb_000127_140 Hb_000127_140 Hb_002184_090--Hb_000127_140 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_008147_090 Hb_008147_090 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824148 0.284294 2.46945 3.8775 0.934843 1.04305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29977 1.17955 2.31752 0.600687 2.81745

CAGE analysis