Hb_002316_010

Information

Type -
Description -
Location Contig2316: 21089-26732
Sequence    

Annotation

kegg
ID rcu:RCOM_1511350
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID KDP31122.1
description hypothetical protein JCGZ_11498 [Jatropha curcas]
swissprot
ID Q9ZUB3
description Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1
trembl
ID A0A067K4Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11498 PE=3 SV=1
Gene Ontology
ID GO:0003824
description spermidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24350: 23526-23804 , PASA_asmbl_24352: 22531-22829 , PASA_asmbl_24353: 21178-26841 , PASA_asmbl_24354: 23384-26718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_010 0.0 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
2 Hb_001635_010 0.189421735 - - -
3 Hb_012565_010 0.2211798685 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
4 Hb_133279_010 0.2350428971 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_019863_100 0.2362864851 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
6 Hb_002193_070 0.2445861467 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000157_050 0.2605114374 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000345_060 0.2634295239 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
9 Hb_002675_170 0.264767273 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
10 Hb_000210_100 0.2649852345 - - pepsin A, putative [Ricinus communis]
11 Hb_000389_040 0.2663092077 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
12 Hb_000094_200 0.2668118953 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000217_010 0.2741357127 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
14 Hb_012090_030 0.2741994898 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
15 Hb_000192_020 0.2855481303 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
16 Hb_000258_060 0.2895750367 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023301_010 0.2898725404 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
18 Hb_147745_010 0.2905348172 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
19 Hb_000995_020 0.2906368457 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007416_100 0.29696572 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_010 Hb_002316_010 Hb_001635_010 Hb_001635_010 Hb_002316_010--Hb_001635_010 Hb_012565_010 Hb_012565_010 Hb_002316_010--Hb_012565_010 Hb_133279_010 Hb_133279_010 Hb_002316_010--Hb_133279_010 Hb_019863_100 Hb_019863_100 Hb_002316_010--Hb_019863_100 Hb_002193_070 Hb_002193_070 Hb_002316_010--Hb_002193_070 Hb_000157_050 Hb_000157_050 Hb_002316_010--Hb_000157_050 Hb_001635_010--Hb_000157_050 Hb_017002_010 Hb_017002_010 Hb_001635_010--Hb_017002_010 Hb_014720_100 Hb_014720_100 Hb_001635_010--Hb_014720_100 Hb_000258_060 Hb_000258_060 Hb_001635_010--Hb_000258_060 Hb_000345_060 Hb_000345_060 Hb_001635_010--Hb_000345_060 Hb_002675_170 Hb_002675_170 Hb_012565_010--Hb_002675_170 Hb_012565_010--Hb_002193_070 Hb_011900_040 Hb_011900_040 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_000617_300 Hb_000617_300 Hb_012565_010--Hb_000617_300 Hb_012090_030 Hb_012090_030 Hb_133279_010--Hb_012090_030 Hb_000389_040 Hb_000389_040 Hb_133279_010--Hb_000389_040 Hb_002498_030 Hb_002498_030 Hb_133279_010--Hb_002498_030 Hb_000574_300 Hb_000574_300 Hb_133279_010--Hb_000574_300 Hb_001105_120 Hb_001105_120 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310 Hb_000210_100 Hb_000210_100 Hb_019863_100--Hb_000210_100 Hb_004162_060 Hb_004162_060 Hb_019863_100--Hb_004162_060 Hb_019863_100--Hb_000258_060 Hb_004204_110 Hb_004204_110 Hb_019863_100--Hb_004204_110 Hb_000164_010 Hb_000164_010 Hb_019863_100--Hb_000164_010 Hb_009010_040 Hb_009010_040 Hb_002193_070--Hb_009010_040 Hb_002193_070--Hb_002675_170 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_001597_050 Hb_001597_050 Hb_000157_050--Hb_001597_050 Hb_178968_040 Hb_178968_040 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_001486_270 Hb_001486_270 Hb_000157_050--Hb_001486_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0356719 0.915298 13.6614 0 0.0313766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7125 0.449024 3.81772 0.0128492 1.79176

CAGE analysis