Hb_002228_080

Information

Type -
Description -
Location Contig2228: 63713-67794
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14240g
description POPTRDRAFT_547984; pectate lyase family protein
nr
ID KDP33375.1
description hypothetical protein JCGZ_12924 [Jatropha curcas]
swissprot
ID Q944R1
description Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
trembl
ID A0A067KM66
description Pectate lyase OS=Jatropha curcas GN=JCGZ_12924 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23070: 63709-67777
cDNA
(Sanger)
(ID:Location)		 028_K24.ab1: 65172-67777

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_080 0.0 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
2 Hb_007110_010 0.1685151974 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
3 Hb_001486_270 0.185934375 - - Ann10 [Manihot esculenta]
4 Hb_003589_080 0.2036107837 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
5 Hb_001597_050 0.2058276059 - - -
6 Hb_000157_050 0.2140232411 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000173_050 0.2181643637 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_001904_050 0.2206423003 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_033152_120 0.2234095062 - - PREDICTED: la-related protein 6C [Jatropha curcas]
10 Hb_006903_030 0.228753352 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
11 Hb_000107_510 0.2292044573 - - phosphate transporter [Manihot esculenta]
12 Hb_062522_010 0.2298347648 - - -
13 Hb_000948_200 0.2316137468 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_001096_130 0.2382551297 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas]
15 Hb_000217_020 0.2385118557 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
16 Hb_133799_010 0.2398245791 - - conserved hypothetical protein [Ricinus communis]
17 Hb_154038_020 0.2406497442 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
18 Hb_000210_100 0.2412146818 - - pepsin A, putative [Ricinus communis]
19 Hb_001454_100 0.2421963875 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
20 Hb_025466_020 0.242502962 - - tubulin beta-6 [Brassica oleracea var. italica]

Gene co-expression network

sample Hb_002228_080 Hb_002228_080 Hb_007110_010 Hb_007110_010 Hb_002228_080--Hb_007110_010 Hb_001486_270 Hb_001486_270 Hb_002228_080--Hb_001486_270 Hb_003589_080 Hb_003589_080 Hb_002228_080--Hb_003589_080 Hb_001597_050 Hb_001597_050 Hb_002228_080--Hb_001597_050 Hb_000157_050 Hb_000157_050 Hb_002228_080--Hb_000157_050 Hb_000173_050 Hb_000173_050 Hb_002228_080--Hb_000173_050 Hb_011379_010 Hb_011379_010 Hb_007110_010--Hb_011379_010 Hb_000107_510 Hb_000107_510 Hb_007110_010--Hb_000107_510 Hb_004672_030 Hb_004672_030 Hb_007110_010--Hb_004672_030 Hb_001004_150 Hb_001004_150 Hb_007110_010--Hb_001004_150 Hb_033152_120 Hb_033152_120 Hb_007110_010--Hb_033152_120 Hb_000260_280 Hb_000260_280 Hb_001486_270--Hb_000260_280 Hb_029920_020 Hb_029920_020 Hb_001486_270--Hb_029920_020 Hb_001486_270--Hb_001597_050 Hb_175933_010 Hb_175933_010 Hb_001486_270--Hb_175933_010 Hb_000192_020 Hb_000192_020 Hb_001486_270--Hb_000192_020 Hb_000138_170 Hb_000138_170 Hb_003589_080--Hb_000138_170 Hb_033354_020 Hb_033354_020 Hb_003589_080--Hb_033354_020 Hb_111985_110 Hb_111985_110 Hb_003589_080--Hb_111985_110 Hb_003589_080--Hb_001004_150 Hb_000217_020 Hb_000217_020 Hb_003589_080--Hb_000217_020 Hb_000032_440 Hb_000032_440 Hb_003589_080--Hb_000032_440 Hb_001584_240 Hb_001584_240 Hb_001597_050--Hb_001584_240 Hb_000740_150 Hb_000740_150 Hb_001597_050--Hb_000740_150 Hb_000776_060 Hb_000776_060 Hb_001597_050--Hb_000776_060 Hb_000483_400 Hb_000483_400 Hb_001597_050--Hb_000483_400 Hb_003875_010 Hb_003875_010 Hb_001597_050--Hb_003875_010 Hb_001635_010 Hb_001635_010 Hb_000157_050--Hb_001635_010 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_000157_050--Hb_001597_050 Hb_178968_040 Hb_178968_040 Hb_000157_050--Hb_178968_040 Hb_000157_050--Hb_001486_270 Hb_006970_140 Hb_006970_140 Hb_000173_050--Hb_006970_140 Hb_002909_020 Hb_002909_020 Hb_000173_050--Hb_002909_020 Hb_003178_020 Hb_003178_020 Hb_000173_050--Hb_003178_020 Hb_003126_130 Hb_003126_130 Hb_000173_050--Hb_003126_130 Hb_000740_040 Hb_000740_040 Hb_000173_050--Hb_000740_040 Hb_002249_070 Hb_002249_070 Hb_000173_050--Hb_002249_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65414 0.121091 19.5106 28.4295 0.395716 1.07224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9082 9.06434 10.4519 1.12989 5.4586

CAGE analysis