Hb_003589_080

Information

Type -
Description -
Location Contig3589: 70530-71221
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08420g
description POPTRDRAFT_836087; hypothetical protein
nr
ID XP_011000232.1
description PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9IQ43
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08420g PE=4 SV=1
Gene Ontology
ID GO:0005634
description mitochondrial import inner membrane translocase subunit tim44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37005: 72091-77203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003589_080 0.0 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
2 Hb_000138_170 0.1661130828 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
3 Hb_033354_020 0.1768577233 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_111985_110 0.1770895406 - - thioredoxin H-type 3 [Hevea brasiliensis]
5 Hb_001004_150 0.1824968879 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
6 Hb_000217_020 0.1951509546 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
7 Hb_000032_440 0.1959984616 - - protein with unknown function [Ricinus communis]
8 Hb_001454_100 0.2021503227 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
9 Hb_002228_080 0.2036107837 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
10 Hb_014497_120 0.2084418857 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
11 Hb_004814_010 0.2098199897 - - PREDICTED: uncharacterized protein LOC105633486 [Jatropha curcas]
12 Hb_002539_100 0.2110020888 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
13 Hb_021409_080 0.2116691376 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
14 Hb_001153_120 0.2140155354 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
15 Hb_001314_030 0.2173374432 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
16 Hb_001951_130 0.2205868956 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_004032_030 0.2222113049 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
18 Hb_025466_020 0.2224658638 - - tubulin beta-6 [Brassica oleracea var. italica]
19 Hb_000417_100 0.223697596 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
20 Hb_001863_130 0.2237299676 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]

Gene co-expression network

sample Hb_003589_080 Hb_003589_080 Hb_000138_170 Hb_000138_170 Hb_003589_080--Hb_000138_170 Hb_033354_020 Hb_033354_020 Hb_003589_080--Hb_033354_020 Hb_111985_110 Hb_111985_110 Hb_003589_080--Hb_111985_110 Hb_001004_150 Hb_001004_150 Hb_003589_080--Hb_001004_150 Hb_000217_020 Hb_000217_020 Hb_003589_080--Hb_000217_020 Hb_000032_440 Hb_000032_440 Hb_003589_080--Hb_000032_440 Hb_000243_080 Hb_000243_080 Hb_000138_170--Hb_000243_080 Hb_000826_090 Hb_000826_090 Hb_000138_170--Hb_000826_090 Hb_006442_020 Hb_006442_020 Hb_000138_170--Hb_006442_020 Hb_003894_080 Hb_003894_080 Hb_000138_170--Hb_003894_080 Hb_000138_170--Hb_111985_110 Hb_019516_080 Hb_019516_080 Hb_000138_170--Hb_019516_080 Hb_001377_280 Hb_001377_280 Hb_033354_020--Hb_001377_280 Hb_033354_020--Hb_000217_020 Hb_033354_020--Hb_111985_110 Hb_001314_030 Hb_001314_030 Hb_033354_020--Hb_001314_030 Hb_000362_180 Hb_000362_180 Hb_033354_020--Hb_000362_180 Hb_021409_080 Hb_021409_080 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_001153_120 Hb_001153_120 Hb_001004_150--Hb_001153_120 Hb_000331_460 Hb_000331_460 Hb_001004_150--Hb_000331_460 Hb_000310_100 Hb_000310_100 Hb_001004_150--Hb_000310_100 Hb_001454_100 Hb_001454_100 Hb_001004_150--Hb_001454_100 Hb_012244_010 Hb_012244_010 Hb_001004_150--Hb_012244_010 Hb_000377_150 Hb_000377_150 Hb_001004_150--Hb_000377_150 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_002960_130 Hb_002960_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001208_040 Hb_001208_040 Hb_000217_020--Hb_001208_040 Hb_000317_490 Hb_000317_490 Hb_000032_440--Hb_000317_490 Hb_000708_040 Hb_000708_040 Hb_000032_440--Hb_000708_040 Hb_002284_310 Hb_002284_310 Hb_000032_440--Hb_002284_310 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90083 0.0957303 2.60992 5.09311 0.181375 0.282738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4002 1.83627 3.17219 0.792217 0.870082

CAGE analysis