Hb_001314_030

Information

Type -
Description -
Location Contig1314: 102801-105474
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39210g
description hypothetical protein
nr
ID XP_012080935.1
description PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
swissprot
ID Q9SYM5
description Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1
trembl
ID A0A067KF69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17141 PE=4 SV=1
Gene Ontology
ID GO:0008460
description trifunctional udp-glucose -dehydratase udp-4-keto-6-deoxy-d-glucose -epimerase udp-4-keto-l-rhamnose-reductase rhm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09168: 102805-104341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_030 0.0 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
2 Hb_000175_230 0.1588040703 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
3 Hb_000417_100 0.1594797697 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
4 Hb_111985_110 0.1729226497 - - thioredoxin H-type 3 [Hevea brasiliensis]
5 Hb_000017_260 0.1762042165 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_000975_350 0.1772341838 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_004032_030 0.1792737994 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
8 Hb_001141_420 0.180299088 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_012305_130 0.1804883748 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
10 Hb_010883_190 0.1808921823 - - conserved hypothetical protein [Ricinus communis]
11 Hb_021409_080 0.1808955396 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
12 Hb_000115_080 0.1821000265 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
13 Hb_033354_020 0.1830996451 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000243_350 0.1838531767 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
15 Hb_000362_180 0.1860616852 - - Pdap1 [Gossypium arboreum]
16 Hb_015807_030 0.1861642038 - - PREDICTED: protein NDR1-like [Jatropha curcas]
17 Hb_010519_050 0.1862591396 - - galactokinase, putative [Ricinus communis]
18 Hb_002615_150 0.1872509222 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
19 Hb_000964_030 0.1872632588 - - ADP/ATP carrier 2 [Theobroma cacao]
20 Hb_000590_120 0.1888817195 - - dehydroascorbate reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001314_030 Hb_001314_030 Hb_000175_230 Hb_000175_230 Hb_001314_030--Hb_000175_230 Hb_000417_100 Hb_000417_100 Hb_001314_030--Hb_000417_100 Hb_111985_110 Hb_111985_110 Hb_001314_030--Hb_111985_110 Hb_000017_260 Hb_000017_260 Hb_001314_030--Hb_000017_260 Hb_000975_350 Hb_000975_350 Hb_001314_030--Hb_000975_350 Hb_004032_030 Hb_004032_030 Hb_001314_030--Hb_004032_030 Hb_010883_190 Hb_010883_190 Hb_000175_230--Hb_010883_190 Hb_001269_670 Hb_001269_670 Hb_000175_230--Hb_001269_670 Hb_001946_050 Hb_001946_050 Hb_000175_230--Hb_001946_050 Hb_166876_010 Hb_166876_010 Hb_000175_230--Hb_166876_010 Hb_000239_040 Hb_000239_040 Hb_000175_230--Hb_000239_040 Hb_000417_100--Hb_004032_030 Hb_000417_100--Hb_111985_110 Hb_000359_090 Hb_000359_090 Hb_000417_100--Hb_000359_090 Hb_000136_100 Hb_000136_100 Hb_000417_100--Hb_000136_100 Hb_021409_080 Hb_021409_080 Hb_000417_100--Hb_021409_080 Hb_000521_130 Hb_000521_130 Hb_000417_100--Hb_000521_130 Hb_111985_110--Hb_021409_080 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_053709_050 Hb_053709_050 Hb_000017_260--Hb_053709_050 Hb_000227_390 Hb_000227_390 Hb_000017_260--Hb_000227_390 Hb_185830_060 Hb_185830_060 Hb_000017_260--Hb_185830_060 Hb_002193_060 Hb_002193_060 Hb_000017_260--Hb_002193_060 Hb_012262_030 Hb_012262_030 Hb_000017_260--Hb_012262_030 Hb_000590_120 Hb_000590_120 Hb_000017_260--Hb_000590_120 Hb_000215_320 Hb_000215_320 Hb_000975_350--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_000975_350--Hb_004108_220 Hb_000975_350--Hb_000359_090 Hb_006060_020 Hb_006060_020 Hb_000975_350--Hb_006060_020 Hb_000749_050 Hb_000749_050 Hb_000975_350--Hb_000749_050 Hb_009898_040 Hb_009898_040 Hb_000975_350--Hb_009898_040 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4444 10.49 14.4189 25.9885 0.951887 4.67076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6014 5.51124 15.7954 7.34863 8.03448

CAGE analysis