Hb_010883_190

Information

Type -
Description -
Location Contig10883: 149351-155787
Sequence    

Annotation

kegg
ID rcu:RCOM_1031430
description hypothetical protein
nr
ID XP_002513771.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9UTS8
description UPF0695 membrane protein C977.11/PB8B6.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC977.11 PE=3 SV=1
trembl
ID B9RJ52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031430 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0695 membrane protein -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02676: 149422-151770 , PASA_asmbl_02678: 151936-154869 , PASA_asmbl_02679: 151936-155784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002325_070 0.1068032267 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001946_050 0.1093953641 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000590_120 0.1206198797 - - dehydroascorbate reductase, putative [Ricinus communis]
5 Hb_000656_310 0.1334069421 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
6 Hb_001080_300 0.1373276798 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
7 Hb_000704_040 0.1375978226 - - aquaporin sip2.1, putative [Ricinus communis]
8 Hb_000175_230 0.1377708638 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
9 Hb_001951_150 0.1384350032 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
10 Hb_000243_350 0.1419994837 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
11 Hb_003125_220 0.1423806527 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
12 Hb_185830_060 0.142523422 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_001627_040 0.1454941376 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
14 Hb_000240_030 0.1455827711 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001029_040 0.1467065963 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
16 Hb_000613_070 0.1480864787 - - -
17 Hb_011606_020 0.1492638798 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
18 Hb_015934_120 0.1497175591 - - PREDICTED: callose synthase 7 [Vitis vinifera]
19 Hb_000061_230 0.1498421046 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
20 Hb_000189_480 0.1503367322 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_010883_190 Hb_010883_190 Hb_002325_070 Hb_002325_070 Hb_010883_190--Hb_002325_070 Hb_001946_050 Hb_001946_050 Hb_010883_190--Hb_001946_050 Hb_000590_120 Hb_000590_120 Hb_010883_190--Hb_000590_120 Hb_000656_310 Hb_000656_310 Hb_010883_190--Hb_000656_310 Hb_001080_300 Hb_001080_300 Hb_010883_190--Hb_001080_300 Hb_000704_040 Hb_000704_040 Hb_010883_190--Hb_000704_040 Hb_002344_100 Hb_002344_100 Hb_002325_070--Hb_002344_100 Hb_003911_020 Hb_003911_020 Hb_002325_070--Hb_003911_020 Hb_002325_070--Hb_000704_040 Hb_002639_020 Hb_002639_020 Hb_002325_070--Hb_002639_020 Hb_000679_230 Hb_000679_230 Hb_002325_070--Hb_000679_230 Hb_001951_150 Hb_001951_150 Hb_001946_050--Hb_001951_150 Hb_001314_080 Hb_001314_080 Hb_001946_050--Hb_001314_080 Hb_000189_480 Hb_000189_480 Hb_001946_050--Hb_000189_480 Hb_048093_010 Hb_048093_010 Hb_001946_050--Hb_048093_010 Hb_000140_340 Hb_000140_340 Hb_001946_050--Hb_000140_340 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_066842_010 Hb_066842_010 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_002110_100 Hb_002110_100 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060 Hb_001226_140 Hb_001226_140 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000504_180 Hb_000504_180 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_000656_310--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_000656_310--Hb_138585_080 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_000928_190 Hb_000928_190 Hb_000704_040--Hb_000928_190 Hb_000704_040--Hb_002344_100 Hb_033152_070 Hb_033152_070 Hb_000704_040--Hb_033152_070 Hb_000243_350 Hb_000243_350 Hb_000704_040--Hb_000243_350 Hb_009898_040 Hb_009898_040 Hb_000704_040--Hb_009898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26789 5.92377 4.35155 13.106 1.30575 2.4937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60167 2.88474 4.8985 3.10636 10.2225

CAGE analysis