Hb_003911_020

Information

Type -
Description -
Location Contig3911: 54452-54892
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10700g
description POPTRDRAFT_578659; hypothetical protein
nr
ID XP_011018222.1
description PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KPQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07821 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39180: 54275-54469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003911_020 0.0 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
2 Hb_000679_230 0.1047292002 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
3 Hb_001609_040 0.1144060799 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
4 Hb_003052_180 0.1220011888 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
5 Hb_002325_070 0.1258593266 - - ATP binding protein, putative [Ricinus communis]
6 Hb_113818_010 0.1272911567 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
7 Hb_000107_110 0.1337445438 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_002344_100 0.1389292959 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
9 Hb_001842_010 0.1403310651 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_002660_110 0.1409556448 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
11 Hb_001946_180 0.1422110947 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003071_070 0.1426353671 - - sucrose synthase 3 [Hevea brasiliensis]
13 Hb_000240_030 0.143482324 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005993_010 0.1436022062 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
15 Hb_000946_110 0.1441483481 - - GTP cyclohydrolase I, putative [Ricinus communis]
16 Hb_010997_090 0.144419201 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
17 Hb_004055_120 0.1451792288 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
18 Hb_009661_030 0.1482142477 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
19 Hb_003994_300 0.1483914139 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002289_060 0.1487884942 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003911_020 Hb_003911_020 Hb_000679_230 Hb_000679_230 Hb_003911_020--Hb_000679_230 Hb_001609_040 Hb_001609_040 Hb_003911_020--Hb_001609_040 Hb_003052_180 Hb_003052_180 Hb_003911_020--Hb_003052_180 Hb_002325_070 Hb_002325_070 Hb_003911_020--Hb_002325_070 Hb_113818_010 Hb_113818_010 Hb_003911_020--Hb_113818_010 Hb_000107_110 Hb_000107_110 Hb_003911_020--Hb_000107_110 Hb_007153_050 Hb_007153_050 Hb_000679_230--Hb_007153_050 Hb_002289_060 Hb_002289_060 Hb_000679_230--Hb_002289_060 Hb_001946_180 Hb_001946_180 Hb_000679_230--Hb_001946_180 Hb_001842_010 Hb_001842_010 Hb_000679_230--Hb_001842_010 Hb_000679_230--Hb_003052_180 Hb_005993_010 Hb_005993_010 Hb_001609_040--Hb_005993_010 Hb_004055_120 Hb_004055_120 Hb_001609_040--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_001609_040--Hb_013394_050 Hb_000742_020 Hb_000742_020 Hb_001609_040--Hb_000742_020 Hb_019181_030 Hb_019181_030 Hb_001609_040--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_001609_040--Hb_000152_600 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_010883_190 Hb_010883_190 Hb_002325_070--Hb_010883_190 Hb_002344_100 Hb_002344_100 Hb_002325_070--Hb_002344_100 Hb_000704_040 Hb_000704_040 Hb_002325_070--Hb_000704_040 Hb_002639_020 Hb_002639_020 Hb_002325_070--Hb_002639_020 Hb_002325_070--Hb_000679_230 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_001894_070 Hb_001894_070 Hb_000107_110--Hb_001894_070 Hb_000107_110--Hb_004881_030 Hb_010042_020 Hb_010042_020 Hb_000107_110--Hb_010042_020 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_000107_110--Hb_003052_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97076 1.80748 1.34083 8.11647 0.494334 3.04802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16273 2.35211 2.79544 1.65307 4.26075

CAGE analysis