Hb_002639_020

Information

Type -
Description -
Location Contig2639: 7693-15093
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01570g
description POPTRDRAFT_798380; hypothetical protein
nr
ID XP_012073704.1
description PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
swissprot
ID Q8LFG1
description Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1
trembl
ID A0A067KX57
description Alpha-amylase OS=Jatropha curcas GN=JCGZ_08146 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable alpha-amylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27545: 6967-7246 , PASA_asmbl_27546: 8560-15205
cDNA
(Sanger)
(ID:Location)		 025_E05.ab1: 8560-10862

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_020 0.0 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
2 Hb_002325_070 0.1369417339 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001999_100 0.1585368467 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
4 Hb_002217_500 0.1625324965 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
5 Hb_005489_150 0.1628967726 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
6 Hb_002344_100 0.1661150895 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
7 Hb_001474_020 0.1681319356 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
8 Hb_000413_020 0.171040742 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
9 Hb_000704_040 0.1770889434 - - aquaporin sip2.1, putative [Ricinus communis]
10 Hb_000291_160 0.1796178112 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
11 Hb_000671_130 0.1815857126 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
12 Hb_011360_110 0.1826313252 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
13 Hb_000417_170 0.1846242251 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
14 Hb_026740_020 0.1868384062 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_003911_020 0.1887162307 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
16 Hb_122636_010 0.1892667008 - - dienelactone hydrolase family protein [Populus trichocarpa]
17 Hb_003994_300 0.1940299189 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010883_190 0.1949910556 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002660_110 0.1957912521 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
20 Hb_006469_070 0.1971829779 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]

Gene co-expression network

sample Hb_002639_020 Hb_002639_020 Hb_002325_070 Hb_002325_070 Hb_002639_020--Hb_002325_070 Hb_001999_100 Hb_001999_100 Hb_002639_020--Hb_001999_100 Hb_002217_500 Hb_002217_500 Hb_002639_020--Hb_002217_500 Hb_005489_150 Hb_005489_150 Hb_002639_020--Hb_005489_150 Hb_002344_100 Hb_002344_100 Hb_002639_020--Hb_002344_100 Hb_001474_020 Hb_001474_020 Hb_002639_020--Hb_001474_020 Hb_010883_190 Hb_010883_190 Hb_002325_070--Hb_010883_190 Hb_002325_070--Hb_002344_100 Hb_003911_020 Hb_003911_020 Hb_002325_070--Hb_003911_020 Hb_000704_040 Hb_000704_040 Hb_002325_070--Hb_000704_040 Hb_000679_230 Hb_000679_230 Hb_002325_070--Hb_000679_230 Hb_001481_150 Hb_001481_150 Hb_001999_100--Hb_001481_150 Hb_006569_060 Hb_006569_060 Hb_001999_100--Hb_006569_060 Hb_002660_110 Hb_002660_110 Hb_001999_100--Hb_002660_110 Hb_033152_070 Hb_033152_070 Hb_001999_100--Hb_033152_070 Hb_000008_190 Hb_000008_190 Hb_001999_100--Hb_000008_190 Hb_026740_020 Hb_026740_020 Hb_001999_100--Hb_026740_020 Hb_002217_500--Hb_001474_020 Hb_003975_010 Hb_003975_010 Hb_002217_500--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002450_030 Hb_002450_030 Hb_002217_500--Hb_002450_030 Hb_023344_110 Hb_023344_110 Hb_002217_500--Hb_023344_110 Hb_005539_140 Hb_005539_140 Hb_005489_150--Hb_005539_140 Hb_011360_110 Hb_011360_110 Hb_005489_150--Hb_011360_110 Hb_002289_150 Hb_002289_150 Hb_005489_150--Hb_002289_150 Hb_028639_030 Hb_028639_030 Hb_005489_150--Hb_028639_030 Hb_000320_350 Hb_000320_350 Hb_005489_150--Hb_000320_350 Hb_000300_230 Hb_000300_230 Hb_005489_150--Hb_000300_230 Hb_002344_100--Hb_000679_230 Hb_002344_100--Hb_000704_040 Hb_006469_070 Hb_006469_070 Hb_002344_100--Hb_006469_070 Hb_000413_020 Hb_000413_020 Hb_002344_100--Hb_000413_020 Hb_000984_310 Hb_000984_310 Hb_002344_100--Hb_000984_310 Hb_001474_020--Hb_011360_110 Hb_132840_160 Hb_132840_160 Hb_001474_020--Hb_132840_160 Hb_001474_020--Hb_002046_060 Hb_001474_020--Hb_006469_070 Hb_001474_020--Hb_023344_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76424 12.5622 1.92418 39.127 2.67591 3.68263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.16938 7.34667 7.83007 3.91548 17.3574

CAGE analysis