Hb_001946_050

Information

Type -
Description -
Location Contig1946: 42058-42977
Sequence    

Annotation

kegg
ID rcu:RCOM_0224230
description hypothetical protein
nr
ID XP_002524503.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SET4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19389: 41970-42727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001951_150 0.1068778352 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
3 Hb_010883_190 0.1093953641 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001314_080 0.11822513 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
5 Hb_000189_480 0.1202868649 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
6 Hb_048093_010 0.1224953353 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_000140_340 0.1226123664 - - PREDICTED: protein ABIL1 [Jatropha curcas]
8 Hb_001675_140 0.125850596 - - hypothetical protein L484_026216 [Morus notabilis]
9 Hb_003125_220 0.1280049337 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
10 Hb_015934_120 0.1282207383 - - PREDICTED: callose synthase 7 [Vitis vinifera]
11 Hb_022092_030 0.1294595447 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
12 Hb_000239_040 0.1299700873 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
13 Hb_000270_480 0.1304551834 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
14 Hb_001504_030 0.1315341504 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
15 Hb_005511_140 0.1324253515 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
16 Hb_000023_360 0.1328062882 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
17 Hb_001029_040 0.1331162836 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_001226_140 0.1348647131 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
19 Hb_000796_150 0.1351210744 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
20 Hb_000023_260 0.1364574508 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001946_050 Hb_001946_050 Hb_001951_150 Hb_001951_150 Hb_001946_050--Hb_001951_150 Hb_010883_190 Hb_010883_190 Hb_001946_050--Hb_010883_190 Hb_001314_080 Hb_001314_080 Hb_001946_050--Hb_001314_080 Hb_000189_480 Hb_000189_480 Hb_001946_050--Hb_000189_480 Hb_048093_010 Hb_048093_010 Hb_001946_050--Hb_048093_010 Hb_000140_340 Hb_000140_340 Hb_001946_050--Hb_000140_340 Hb_011214_090 Hb_011214_090 Hb_001951_150--Hb_011214_090 Hb_000016_210 Hb_000016_210 Hb_001951_150--Hb_000016_210 Hb_005463_110 Hb_005463_110 Hb_001951_150--Hb_005463_110 Hb_001951_150--Hb_001314_080 Hb_001999_210 Hb_001999_210 Hb_001951_150--Hb_001999_210 Hb_002325_070 Hb_002325_070 Hb_010883_190--Hb_002325_070 Hb_000590_120 Hb_000590_120 Hb_010883_190--Hb_000590_120 Hb_000656_310 Hb_000656_310 Hb_010883_190--Hb_000656_310 Hb_001080_300 Hb_001080_300 Hb_010883_190--Hb_001080_300 Hb_000704_040 Hb_000704_040 Hb_010883_190--Hb_000704_040 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_000941_100 Hb_000941_100 Hb_048093_010--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_048093_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_048093_010--Hb_012150_030 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180 Hb_134849_010 Hb_134849_010 Hb_048093_010--Hb_134849_010 Hb_001876_040 Hb_001876_040 Hb_000140_340--Hb_001876_040 Hb_000359_290 Hb_000359_290 Hb_000140_340--Hb_000359_290 Hb_000796_150 Hb_000796_150 Hb_000140_340--Hb_000796_150 Hb_022693_130 Hb_022693_130 Hb_000140_340--Hb_022693_130 Hb_000212_120 Hb_000212_120 Hb_000140_340--Hb_000212_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7169 8.37969 8.65206 15.7777 4.72621 2.99914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6944 6.17007 5.42146 3.98119 18.1552

CAGE analysis