Hb_001269_670

Information

Type -
Description -
Location Contig1269: 679938-680624
Sequence    

Annotation

kegg
ID rcu:RCOM_1442490
description hypothetical protein
nr
ID XP_012067463.1
description PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26962 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_670 0.0 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
2 Hb_009847_030 0.1036674552 - - zinc finger family protein [Populus trichocarpa]
3 Hb_000796_160 0.1072681038 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_000239_040 0.1137121576 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
5 Hb_001410_070 0.117696453 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
6 Hb_001769_170 0.122957428 - - 50S ribosomal protein L31, putative [Ricinus communis]
7 Hb_000105_050 0.124222444 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
8 Hb_001314_080 0.1275494653 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
9 Hb_000181_090 0.1286980558 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
10 Hb_001504_030 0.1289292668 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
11 Hb_000023_260 0.1310106083 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
12 Hb_000025_780 0.1318695538 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
13 Hb_000291_180 0.1354668444 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
14 Hb_000559_020 0.1357178705 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
15 Hb_171554_010 0.1369906304 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
16 Hb_000282_080 0.1380673209 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001675_140 0.1407210703 - - hypothetical protein L484_026216 [Morus notabilis]
18 Hb_001500_060 0.1410163534 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
19 Hb_001935_100 0.1420007119 - - structural molecule, putative [Ricinus communis]
20 Hb_001348_190 0.142389344 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001269_670 Hb_001269_670 Hb_009847_030 Hb_009847_030 Hb_001269_670--Hb_009847_030 Hb_000796_160 Hb_000796_160 Hb_001269_670--Hb_000796_160 Hb_000239_040 Hb_000239_040 Hb_001269_670--Hb_000239_040 Hb_001410_070 Hb_001410_070 Hb_001269_670--Hb_001410_070 Hb_001769_170 Hb_001769_170 Hb_001269_670--Hb_001769_170 Hb_000105_050 Hb_000105_050 Hb_001269_670--Hb_000105_050 Hb_000003_680 Hb_000003_680 Hb_009847_030--Hb_000003_680 Hb_102948_010 Hb_102948_010 Hb_009847_030--Hb_102948_010 Hb_000291_180 Hb_000291_180 Hb_009847_030--Hb_000291_180 Hb_005235_070 Hb_005235_070 Hb_009847_030--Hb_005235_070 Hb_001430_020 Hb_001430_020 Hb_009847_030--Hb_001430_020 Hb_002218_020 Hb_002218_020 Hb_009847_030--Hb_002218_020 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_001935_100 Hb_001935_100 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_092462_020 Hb_092462_020 Hb_000239_040--Hb_092462_020 Hb_000282_080 Hb_000282_080 Hb_000239_040--Hb_000282_080 Hb_000239_040--Hb_000230_400 Hb_000239_040--Hb_000796_160 Hb_001314_080 Hb_001314_080 Hb_000239_040--Hb_001314_080 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_001410_070--Hb_001935_100 Hb_001410_070--Hb_000025_780 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_001410_070--Hb_005539_010 Hb_001946_160 Hb_001946_160 Hb_001769_170--Hb_001946_160 Hb_001769_170--Hb_001410_070 Hb_000627_260 Hb_000627_260 Hb_001769_170--Hb_000627_260 Hb_021650_040 Hb_021650_040 Hb_001769_170--Hb_021650_040 Hb_001769_170--Hb_000487_260 Hb_001769_170--Hb_006538_120 Hb_000181_090 Hb_000181_090 Hb_000105_050--Hb_000181_090 Hb_001328_030 Hb_001328_030 Hb_000105_050--Hb_001328_030 Hb_004440_020 Hb_004440_020 Hb_000105_050--Hb_004440_020 Hb_002284_150 Hb_002284_150 Hb_000105_050--Hb_002284_150 Hb_003077_020 Hb_003077_020 Hb_000105_050--Hb_003077_020 Hb_000422_030 Hb_000422_030 Hb_000105_050--Hb_000422_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.450163 0.534521 0.831164 0.613878 0.20721 0.382529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.830516 0.457016 0.348733 0.132931 0.90175

CAGE analysis