Hb_001769_170

Information

Type -
Description -
Location Contig1769: 167535-168719
Sequence    

Annotation

kegg
ID rcu:RCOM_1595100
description 50S ribosomal protein L31, putative
nr
ID XP_002510420.1
description 50S ribosomal protein L31, putative [Ricinus communis]
swissprot
ID Q9FWS4
description 50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=2 SV=1
trembl
ID B9R7X7
description 50S ribosomal protein L31 OS=Ricinus communis GN=RCOM_1595100 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16989: 167914-168680 , PASA_asmbl_16990: 166603-168658
cDNA
(Sanger)
(ID:Location)		 006_N23.ab1: 167935-168666 , 008_M20.ab1: 167937-168656 , 039_A20.ab1: 168001-168680 , 043_H14.ab1: 167937-168656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_170 0.0 - - 50S ribosomal protein L31, putative [Ricinus communis]
2 Hb_001946_160 0.0955119559 - - putative chaperon P13.9 [Castanea sativa]
3 Hb_001410_070 0.1018435878 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
4 Hb_000627_260 0.1067028871 - - chloride channel clc, putative [Ricinus communis]
5 Hb_021650_040 0.1084910888 - - EG2771 [Manihot esculenta]
6 Hb_000487_260 0.10861423 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
7 Hb_006538_120 0.1086737621 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
8 Hb_000796_160 0.1112387142 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_077549_010 0.1114085777 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
10 Hb_001935_100 0.113753229 - - structural molecule, putative [Ricinus communis]
11 Hb_000086_080 0.1141714941 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000941_100 0.1163150922 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
13 Hb_019053_060 0.117277322 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_001022_030 0.1173393791 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_003994_160 0.1202627428 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
16 Hb_000023_260 0.1215197653 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
17 Hb_001269_670 0.122957428 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
18 Hb_009767_130 0.1243124003 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
19 Hb_000228_060 0.1250477898 - - hypothetical protein JCGZ_21532 [Jatropha curcas]
20 Hb_005127_030 0.1259197369 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_170 Hb_001769_170 Hb_001946_160 Hb_001946_160 Hb_001769_170--Hb_001946_160 Hb_001410_070 Hb_001410_070 Hb_001769_170--Hb_001410_070 Hb_000627_260 Hb_000627_260 Hb_001769_170--Hb_000627_260 Hb_021650_040 Hb_021650_040 Hb_001769_170--Hb_021650_040 Hb_000487_260 Hb_000487_260 Hb_001769_170--Hb_000487_260 Hb_006538_120 Hb_006538_120 Hb_001769_170--Hb_006538_120 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_025194_060 Hb_025194_060 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_001410_070--Hb_006538_120 Hb_001935_100 Hb_001935_100 Hb_001410_070--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001410_070--Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_001410_070--Hb_000025_780 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_001410_070--Hb_005539_010 Hb_009767_130 Hb_009767_130 Hb_000627_260--Hb_009767_130 Hb_003994_160 Hb_003994_160 Hb_000627_260--Hb_003994_160 Hb_000627_260--Hb_000796_160 Hb_000172_440 Hb_000172_440 Hb_000627_260--Hb_000172_440 Hb_157023_020 Hb_157023_020 Hb_000627_260--Hb_157023_020 Hb_021650_040--Hb_025194_060 Hb_001946_140 Hb_001946_140 Hb_021650_040--Hb_001946_140 Hb_003304_030 Hb_003304_030 Hb_021650_040--Hb_003304_030 Hb_021650_040--Hb_001946_160 Hb_019053_060 Hb_019053_060 Hb_021650_040--Hb_019053_060 Hb_000811_070 Hb_000811_070 Hb_000487_260--Hb_000811_070 Hb_006846_150 Hb_006846_150 Hb_000487_260--Hb_006846_150 Hb_000487_260--Hb_019053_060 Hb_000487_260--Hb_000796_160 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_006538_120--Hb_009775_010 Hb_006538_120--Hb_005539_010 Hb_006538_120--Hb_005127_030 Hb_006538_120--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1001 19.8662 59.7559 40.8169 13.9445 36.4425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1153 42.1092 19.2943 10.6392 67.2134

CAGE analysis