Hb_021650_040

Information

Type -
Description -
Location Contig21650: 26351-29490
Sequence    

Annotation

kegg
ID rcu:RCOM_0852200
description metal ion binding protein, putative
nr
ID AGT97350.1
description EG2771 [Manihot esculenta]
swissprot
ID -
description -
trembl
ID U3GQG9
description EG2771 OS=Manihot esculenta GN=EG2771 PE=2 SV=1
Gene Ontology
ID GO:0009579
description eg2771

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22385: 26388-29487
cDNA
(Sanger)
(ID:Location)		 025_C19.ab1: 26390-29441 , 047_N14.ab1: 26390-29442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021650_040 0.0 - - EG2771 [Manihot esculenta]
2 Hb_025194_060 0.0872397067 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_001946_140 0.0970284976 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
4 Hb_003304_030 0.1010527125 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_001946_160 0.1012251351 - - putative chaperon P13.9 [Castanea sativa]
6 Hb_019053_060 0.1032712068 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
7 Hb_001769_170 0.1084910888 - - 50S ribosomal protein L31, putative [Ricinus communis]
8 Hb_000051_060 0.1165421137 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001541_110 0.1199133682 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_001022_030 0.1226462553 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
11 Hb_004440_020 0.1234544243 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
12 Hb_000926_080 0.1237078024 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
13 Hb_001329_090 0.124182021 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001863_120 0.1252224496 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_000003_780 0.1263426612 - - hexokinase [Manihot esculenta]
16 Hb_009252_060 0.1267959131 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
17 Hb_156850_100 0.1275529581 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
18 Hb_000035_240 0.1280259068 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005127_030 0.1300283997 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_011310_140 0.130756429 - - hypothetical protein JCGZ_07173 [Jatropha curcas]

Gene co-expression network

sample Hb_021650_040 Hb_021650_040 Hb_025194_060 Hb_025194_060 Hb_021650_040--Hb_025194_060 Hb_001946_140 Hb_001946_140 Hb_021650_040--Hb_001946_140 Hb_003304_030 Hb_003304_030 Hb_021650_040--Hb_003304_030 Hb_001946_160 Hb_001946_160 Hb_021650_040--Hb_001946_160 Hb_019053_060 Hb_019053_060 Hb_021650_040--Hb_019053_060 Hb_001769_170 Hb_001769_170 Hb_021650_040--Hb_001769_170 Hb_025194_060--Hb_001946_160 Hb_025194_060--Hb_003304_030 Hb_025194_060--Hb_019053_060 Hb_005127_030 Hb_005127_030 Hb_025194_060--Hb_005127_030 Hb_005539_010 Hb_005539_010 Hb_025194_060--Hb_005539_010 Hb_000035_240 Hb_000035_240 Hb_001946_140--Hb_000035_240 Hb_004440_020 Hb_004440_020 Hb_001946_140--Hb_004440_020 Hb_001301_340 Hb_001301_340 Hb_001946_140--Hb_001301_340 Hb_007534_050 Hb_007534_050 Hb_001946_140--Hb_007534_050 Hb_000163_100 Hb_000163_100 Hb_001946_140--Hb_000163_100 Hb_011310_140 Hb_011310_140 Hb_003304_030--Hb_011310_140 Hb_003304_030--Hb_001946_160 Hb_003304_030--Hb_005127_030 Hb_000976_190 Hb_000976_190 Hb_003304_030--Hb_000976_190 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_009252_060 Hb_009252_060 Hb_019053_060--Hb_009252_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_019053_060--Hb_001946_160 Hb_001769_170--Hb_001946_160 Hb_001769_170--Hb_001410_070 Hb_000627_260 Hb_000627_260 Hb_001769_170--Hb_000627_260 Hb_001769_170--Hb_000487_260 Hb_001769_170--Hb_006538_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3973 6.40479 69.9371 33.7056 14.5524 28.7211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2744 41.1977 18.8989 9.70655 57.9776

CAGE analysis