Hb_000175_230

Information

Type -
Description -
Location Contig175: 140545-141991
Sequence    

Annotation

kegg
ID rcu:RCOM_0900240
description GTP binding protein, putative
nr
ID XP_012073172.1
description PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
swissprot
ID Q9LVZ8
description Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1
trembl
ID A0A067KLF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06137 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16690: 140560-141950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_230 0.0 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
2 Hb_010883_190 0.1377708638 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001269_670 0.1527033118 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
4 Hb_001946_050 0.1575446931 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001314_030 0.1588040703 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
6 Hb_166876_010 0.169809317 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
7 Hb_000239_040 0.1699241819 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
8 Hb_000061_230 0.1716290697 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
9 Hb_000590_120 0.1718982508 - - dehydroascorbate reductase, putative [Ricinus communis]
10 Hb_007441_080 0.1738925657 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
11 Hb_005563_070 0.1740214795 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
12 Hb_001675_140 0.1802738204 - - hypothetical protein L484_026216 [Morus notabilis]
13 Hb_000049_110 0.1805127595 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
14 Hb_001226_140 0.1812920779 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
15 Hb_001504_030 0.1814381657 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
16 Hb_008053_050 0.1845566303 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
17 Hb_000615_050 0.1888278555 - - Potassium transporter 11 family protein [Populus trichocarpa]
18 Hb_003125_220 0.1902652637 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
19 Hb_001766_050 0.191291621 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
20 Hb_001314_080 0.1913690865 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]

Gene co-expression network

sample Hb_000175_230 Hb_000175_230 Hb_010883_190 Hb_010883_190 Hb_000175_230--Hb_010883_190 Hb_001269_670 Hb_001269_670 Hb_000175_230--Hb_001269_670 Hb_001946_050 Hb_001946_050 Hb_000175_230--Hb_001946_050 Hb_001314_030 Hb_001314_030 Hb_000175_230--Hb_001314_030 Hb_166876_010 Hb_166876_010 Hb_000175_230--Hb_166876_010 Hb_000239_040 Hb_000239_040 Hb_000175_230--Hb_000239_040 Hb_002325_070 Hb_002325_070 Hb_010883_190--Hb_002325_070 Hb_010883_190--Hb_001946_050 Hb_000590_120 Hb_000590_120 Hb_010883_190--Hb_000590_120 Hb_000656_310 Hb_000656_310 Hb_010883_190--Hb_000656_310 Hb_001080_300 Hb_001080_300 Hb_010883_190--Hb_001080_300 Hb_000704_040 Hb_000704_040 Hb_010883_190--Hb_000704_040 Hb_009847_030 Hb_009847_030 Hb_001269_670--Hb_009847_030 Hb_000796_160 Hb_000796_160 Hb_001269_670--Hb_000796_160 Hb_001269_670--Hb_000239_040 Hb_001410_070 Hb_001410_070 Hb_001269_670--Hb_001410_070 Hb_001769_170 Hb_001769_170 Hb_001269_670--Hb_001769_170 Hb_000105_050 Hb_000105_050 Hb_001269_670--Hb_000105_050 Hb_001951_150 Hb_001951_150 Hb_001946_050--Hb_001951_150 Hb_001314_080 Hb_001314_080 Hb_001946_050--Hb_001314_080 Hb_000189_480 Hb_000189_480 Hb_001946_050--Hb_000189_480 Hb_048093_010 Hb_048093_010 Hb_001946_050--Hb_048093_010 Hb_000140_340 Hb_000140_340 Hb_001946_050--Hb_000140_340 Hb_000417_100 Hb_000417_100 Hb_001314_030--Hb_000417_100 Hb_111985_110 Hb_111985_110 Hb_001314_030--Hb_111985_110 Hb_000017_260 Hb_000017_260 Hb_001314_030--Hb_000017_260 Hb_000975_350 Hb_000975_350 Hb_001314_030--Hb_000975_350 Hb_004032_030 Hb_004032_030 Hb_001314_030--Hb_004032_030 Hb_004242_110 Hb_004242_110 Hb_166876_010--Hb_004242_110 Hb_001160_100 Hb_001160_100 Hb_166876_010--Hb_001160_100 Hb_011310_150 Hb_011310_150 Hb_166876_010--Hb_011310_150 Hb_001675_140 Hb_001675_140 Hb_166876_010--Hb_001675_140 Hb_001629_090 Hb_001629_090 Hb_166876_010--Hb_001629_090 Hb_000397_150 Hb_000397_150 Hb_166876_010--Hb_000397_150 Hb_092462_020 Hb_092462_020 Hb_000239_040--Hb_092462_020 Hb_000282_080 Hb_000282_080 Hb_000239_040--Hb_000282_080 Hb_000230_400 Hb_000230_400 Hb_000239_040--Hb_000230_400 Hb_000239_040--Hb_000796_160 Hb_000239_040--Hb_001314_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7496 32.4576 38.0466 53.9675 4.01572 9.26435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.5274 20.1806 38.3964 6.88457 50.9188

CAGE analysis