Hb_033354_020

Information

Type -
Description -
Location Contig33354: 21599-29476
Sequence    

Annotation

kegg
ID rcu:RCOM_0855230
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44)
nr
ID AIU41631.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LJX0
description ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1
trembl
ID A0A097P9R2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB19 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34990: 21709-21958 , PASA_asmbl_34991: 22007-29440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033354_020 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_001377_280 0.1700048834 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
3 Hb_000217_020 0.1720886335 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
4 Hb_111985_110 0.1731911149 - - thioredoxin H-type 3 [Hevea brasiliensis]
5 Hb_003589_080 0.1768577233 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
6 Hb_001314_030 0.1830996451 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
7 Hb_000362_180 0.1940043536 - - Pdap1 [Gossypium arboreum]
8 Hb_009748_010 0.1965963375 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
9 Hb_000343_140 0.1982524209 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
10 Hb_000566_070 0.2007418812 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004453_070 0.2008503509 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
12 Hb_000544_030 0.2026578988 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004032_030 0.2028748091 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
14 Hb_000742_160 0.2074063187 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
15 Hb_000417_100 0.2115251397 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
16 Hb_004116_020 0.2128468093 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
17 Hb_004093_020 0.2138329464 - - Calcium-binding EF-hand family protein [Theobroma cacao]
18 Hb_012940_030 0.2140118188 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
19 Hb_001008_200 0.2156814897 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
20 Hb_006405_030 0.2158423631 - - hypothetical protein VITISV_043238 [Vitis vinifera]

Gene co-expression network

sample Hb_033354_020 Hb_033354_020 Hb_001377_280 Hb_001377_280 Hb_033354_020--Hb_001377_280 Hb_000217_020 Hb_000217_020 Hb_033354_020--Hb_000217_020 Hb_111985_110 Hb_111985_110 Hb_033354_020--Hb_111985_110 Hb_003589_080 Hb_003589_080 Hb_033354_020--Hb_003589_080 Hb_001314_030 Hb_001314_030 Hb_033354_020--Hb_001314_030 Hb_000362_180 Hb_000362_180 Hb_033354_020--Hb_000362_180 Hb_000343_140 Hb_000343_140 Hb_001377_280--Hb_000343_140 Hb_000311_040 Hb_000311_040 Hb_001377_280--Hb_000311_040 Hb_183610_010 Hb_183610_010 Hb_001377_280--Hb_183610_010 Hb_004453_070 Hb_004453_070 Hb_001377_280--Hb_004453_070 Hb_004117_120 Hb_004117_120 Hb_001377_280--Hb_004117_120 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_002960_130 Hb_002960_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001208_040 Hb_001208_040 Hb_000217_020--Hb_001208_040 Hb_021409_080 Hb_021409_080 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_000138_170 Hb_000138_170 Hb_003589_080--Hb_000138_170 Hb_003589_080--Hb_111985_110 Hb_001004_150 Hb_001004_150 Hb_003589_080--Hb_001004_150 Hb_003589_080--Hb_000217_020 Hb_000032_440 Hb_000032_440 Hb_003589_080--Hb_000032_440 Hb_000175_230 Hb_000175_230 Hb_001314_030--Hb_000175_230 Hb_001314_030--Hb_000417_100 Hb_001314_030--Hb_111985_110 Hb_000017_260 Hb_000017_260 Hb_001314_030--Hb_000017_260 Hb_000975_350 Hb_000975_350 Hb_001314_030--Hb_000975_350 Hb_001314_030--Hb_004032_030 Hb_004176_070 Hb_004176_070 Hb_000362_180--Hb_004176_070 Hb_059480_010 Hb_059480_010 Hb_000362_180--Hb_059480_010 Hb_000115_080 Hb_000115_080 Hb_000362_180--Hb_000115_080 Hb_000510_300 Hb_000510_300 Hb_000362_180--Hb_000510_300 Hb_000362_180--Hb_004032_030 Hb_124373_010 Hb_124373_010 Hb_000362_180--Hb_124373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.44647 2.3654 7.91849 20.1019 1.67876 1.30355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4723 3.33195 5.22585 1.39211 2.47099

CAGE analysis