Hb_000173_050

Information

Type -
Description -
Location Contig173: 24899-39796
Sequence    

Annotation

kegg
ID rcu:RCOM_0912830
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_002517165.1
description basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
swissprot
ID P13917
description Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2
trembl
ID B9RTU6
description Basic 7S globulin 2 small subunit, putative OS=Ricinus communis GN=RCOM_0912830 PE=4 SV=1
Gene Ontology
ID GO:0004190
description basic 7s globulin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16414: 25613-26120 , PASA_asmbl_16417: 40281-40610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_050 0.0 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
2 Hb_006970_140 0.1289570833 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
3 Hb_002909_020 0.1553731299 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_003178_020 0.1832668826 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
5 Hb_003126_130 0.1844468405 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
6 Hb_000740_040 0.1883429429 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
7 Hb_002249_070 0.203762589 - - gcn4-complementing protein, putative [Ricinus communis]
8 Hb_001863_130 0.2044060425 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
9 Hb_000529_150 0.205135376 - - protein with unknown function [Ricinus communis]
10 Hb_118282_010 0.2069153649 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
11 Hb_005181_160 0.2101625137 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
12 Hb_000282_050 0.2136962708 - - calcineurin B, putative [Ricinus communis]
13 Hb_000948_200 0.2139012053 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_185224_010 0.2177799756 - - zinc finger protein, putative [Ricinus communis]
15 Hb_002228_080 0.2181643637 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
16 Hb_001767_060 0.2200705801 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_030627_070 0.220470481 - - histone H4 [Zea mays]
18 Hb_000189_540 0.2209562391 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
19 Hb_000340_500 0.2214151182 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
20 Hb_006275_060 0.2216659274 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_000173_050 Hb_000173_050 Hb_006970_140 Hb_006970_140 Hb_000173_050--Hb_006970_140 Hb_002909_020 Hb_002909_020 Hb_000173_050--Hb_002909_020 Hb_003178_020 Hb_003178_020 Hb_000173_050--Hb_003178_020 Hb_003126_130 Hb_003126_130 Hb_000173_050--Hb_003126_130 Hb_000740_040 Hb_000740_040 Hb_000173_050--Hb_000740_040 Hb_002249_070 Hb_002249_070 Hb_000173_050--Hb_002249_070 Hb_006970_140--Hb_003178_020 Hb_006275_060 Hb_006275_060 Hb_006970_140--Hb_006275_060 Hb_101146_010 Hb_101146_010 Hb_006970_140--Hb_101146_010 Hb_000684_120 Hb_000684_120 Hb_006970_140--Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_006970_140--Hb_030627_070 Hb_001863_130 Hb_001863_130 Hb_002909_020--Hb_001863_130 Hb_002909_020--Hb_003126_130 Hb_000832_190 Hb_000832_190 Hb_002909_020--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_002909_020--Hb_001377_450 Hb_004984_030 Hb_004984_030 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_002631_300 Hb_002631_300 Hb_003178_020--Hb_002631_300 Hb_001767_060 Hb_001767_060 Hb_003178_020--Hb_001767_060 Hb_106552_070 Hb_106552_070 Hb_003178_020--Hb_106552_070 Hb_004449_040 Hb_004449_040 Hb_003178_020--Hb_004449_040 Hb_007894_050 Hb_007894_050 Hb_003126_130--Hb_007894_050 Hb_003126_130--Hb_001377_450 Hb_001073_080 Hb_001073_080 Hb_003126_130--Hb_001073_080 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010 Hb_000740_040--Hb_001073_080 Hb_118282_010 Hb_118282_010 Hb_000740_040--Hb_118282_010 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000005_110 Hb_000005_110 Hb_000740_040--Hb_000005_110 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_000740_040--Hb_003126_130 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_000270_180 Hb_000270_180 Hb_002249_070--Hb_000270_180 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134763 0.278715 2.72106 1.95781 0.10006 0.0908721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05333 1.79548 0.750394 0.373993 0.267953

CAGE analysis