Hb_006970_140

Information

Type -
Description -
Location Contig6970: 115594-116004
Sequence    

Annotation

kegg
ID pda:103711388
description histone H3.2
nr
ID XP_004252600.1
description PREDICTED: histone H3.2-like [Solanum lycopersicum]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID K4DFY5
description Histone H3 OS=Solanum lycopersicum GN=Solyc12g056540.1 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54654: 115293-116071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_140 0.0 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
2 Hb_000173_050 0.1289570833 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_003178_020 0.1658819996 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
4 Hb_006275_060 0.1700052926 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_101146_010 0.1746178195 - - PREDICTED: peregrin-like [Jatropha curcas]
6 Hb_000684_120 0.1855966805 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
7 Hb_030627_070 0.1856021868 - - histone H4 [Zea mays]
8 Hb_000282_050 0.1877486499 - - calcineurin B, putative [Ricinus communis]
9 Hb_002909_020 0.1894425143 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
10 Hb_000948_200 0.1942744066 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_004162_230 0.1996294515 - - PREDICTED: histone H2B [Jatropha curcas]
12 Hb_004449_040 0.202450302 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
13 Hb_000005_110 0.2084489054 - - histone H2B1 [Hevea brasiliensis]
14 Hb_000740_040 0.2107303532 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
15 Hb_188281_030 0.212412776 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
16 Hb_004117_190 0.2128914628 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
17 Hb_002235_380 0.2137879249 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
18 Hb_002307_020 0.2145707299 - - PREDICTED: histone H1-like [Jatropha curcas]
19 Hb_089140_090 0.2165152743 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
20 Hb_006445_020 0.2165884537 - - hypothetical protein L484_026741 [Morus notabilis]

Gene co-expression network

sample Hb_006970_140 Hb_006970_140 Hb_000173_050 Hb_000173_050 Hb_006970_140--Hb_000173_050 Hb_003178_020 Hb_003178_020 Hb_006970_140--Hb_003178_020 Hb_006275_060 Hb_006275_060 Hb_006970_140--Hb_006275_060 Hb_101146_010 Hb_101146_010 Hb_006970_140--Hb_101146_010 Hb_000684_120 Hb_000684_120 Hb_006970_140--Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_006970_140--Hb_030627_070 Hb_002909_020 Hb_002909_020 Hb_000173_050--Hb_002909_020 Hb_000173_050--Hb_003178_020 Hb_003126_130 Hb_003126_130 Hb_000173_050--Hb_003126_130 Hb_000740_040 Hb_000740_040 Hb_000173_050--Hb_000740_040 Hb_002249_070 Hb_002249_070 Hb_000173_050--Hb_002249_070 Hb_002631_300 Hb_002631_300 Hb_003178_020--Hb_002631_300 Hb_001767_060 Hb_001767_060 Hb_003178_020--Hb_001767_060 Hb_106552_070 Hb_106552_070 Hb_003178_020--Hb_106552_070 Hb_004449_040 Hb_004449_040 Hb_003178_020--Hb_004449_040 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_003784_040 Hb_003784_040 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_005725_150 Hb_005725_150 Hb_006275_060--Hb_005725_150 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_000684_120--Hb_030627_070 Hb_000563_440 Hb_000563_440 Hb_000684_120--Hb_000563_440 Hb_005271_140 Hb_005271_140 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_000684_120--Hb_004449_040 Hb_030627_070--Hb_003399_100 Hb_030627_070--Hb_002045_190 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8724 14.0185 126.256 91.3653 2.65181 2.61416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0287 48.9093 12.2347 20.8518 13.4454

CAGE analysis