Hb_003178_020

Information

Type transcription factor
Description TF Family: B3
Location Contig3178: 21769-23374
Sequence    

Annotation

kegg
ID rcu:RCOM_0291130
description hypothetical protein
nr
ID XP_002533031.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZW74
description Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana GN=PUX11 PE=1 SV=2
trembl
ID B9T462
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0291130 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor nga4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33482: 21649-25053 , PASA_asmbl_33483: 22201-24665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003178_020 0.0 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
2 Hb_006970_140 0.1658819996 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
3 Hb_002631_300 0.1666090864 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
4 Hb_001767_060 0.1749610362 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000173_050 0.1832668826 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
6 Hb_106552_070 0.1918578319 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004449_040 0.1944168327 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
8 Hb_000152_210 0.1983226625 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000282_050 0.199659034 - - calcineurin B, putative [Ricinus communis]
10 Hb_089140_090 0.2036539477 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
11 Hb_000155_090 0.2039651244 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
12 Hb_101146_010 0.204669423 - - PREDICTED: peregrin-like [Jatropha curcas]
13 Hb_001597_050 0.211892719 - - -
14 Hb_000740_040 0.2118997698 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
15 Hb_011242_050 0.2151926352 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
16 Hb_000948_200 0.2161869715 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_133799_010 0.2165674039 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001450_030 0.2170218048 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
19 Hb_188281_030 0.217593281 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
20 Hb_000189_540 0.2181923641 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003178_020 Hb_003178_020 Hb_006970_140 Hb_006970_140 Hb_003178_020--Hb_006970_140 Hb_002631_300 Hb_002631_300 Hb_003178_020--Hb_002631_300 Hb_001767_060 Hb_001767_060 Hb_003178_020--Hb_001767_060 Hb_000173_050 Hb_000173_050 Hb_003178_020--Hb_000173_050 Hb_106552_070 Hb_106552_070 Hb_003178_020--Hb_106552_070 Hb_004449_040 Hb_004449_040 Hb_003178_020--Hb_004449_040 Hb_006970_140--Hb_000173_050 Hb_006275_060 Hb_006275_060 Hb_006970_140--Hb_006275_060 Hb_101146_010 Hb_101146_010 Hb_006970_140--Hb_101146_010 Hb_000684_120 Hb_000684_120 Hb_006970_140--Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_006970_140--Hb_030627_070 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_093458_010 Hb_093458_010 Hb_001767_060--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_002909_020 Hb_002909_020 Hb_000173_050--Hb_002909_020 Hb_003126_130 Hb_003126_130 Hb_000173_050--Hb_003126_130 Hb_000740_040 Hb_000740_040 Hb_000173_050--Hb_000740_040 Hb_002249_070 Hb_002249_070 Hb_000173_050--Hb_002249_070 Hb_011457_030 Hb_011457_030 Hb_106552_070--Hb_011457_030 Hb_089140_090 Hb_089140_090 Hb_106552_070--Hb_089140_090 Hb_014508_010 Hb_014508_010 Hb_106552_070--Hb_014508_010 Hb_133799_010 Hb_133799_010 Hb_106552_070--Hb_133799_010 Hb_106552_070--Hb_052764_070 Hb_004449_040--Hb_000684_120 Hb_000563_440 Hb_000563_440 Hb_004449_040--Hb_000563_440 Hb_001114_170 Hb_001114_170 Hb_004449_040--Hb_001114_170 Hb_005271_140 Hb_005271_140 Hb_004449_040--Hb_005271_140 Hb_004449_040--Hb_101146_010 Hb_002411_060 Hb_002411_060 Hb_004449_040--Hb_002411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496468 0.909755 10.6869 9.61203 0.502106 0.327749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26787 9.43871 0.546648 1.5984 1.81486

CAGE analysis