Hb_000152_210

Information

Type -
Description -
Location Contig152: 172579-175809
Sequence    

Annotation

kegg
ID rcu:RCOM_1498770
description hypothetical protein
nr
ID XP_002510898.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9R9M3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498770 PE=4 SV=1
Gene Ontology
ID GO:0015630
description protein tpx2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12963: 171365-172637 , PASA_asmbl_12964: 174009-174643 , PASA_asmbl_12965: 174697-175878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001450_030 0.1507589412 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
3 Hb_000189_540 0.1515440807 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
4 Hb_007441_170 0.1522320255 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
5 Hb_015807_160 0.1637541335 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
6 Hb_000352_200 0.1715139692 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
7 Hb_000155_090 0.1749715976 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
8 Hb_009486_210 0.1752887792 - - -
9 Hb_089140_090 0.1856326743 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
10 Hb_001767_060 0.1860293309 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_000008_370 0.1891633544 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
12 Hb_000523_110 0.1896811074 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
13 Hb_000025_370 0.1898459424 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
14 Hb_002686_180 0.1936347636 - - PREDICTED: early nodulin-93-like [Populus euphratica]
15 Hb_000740_040 0.1970710524 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
16 Hb_098315_020 0.1977764794 - - hypothetical protein M569_15712 [Genlisea aurea]
17 Hb_003178_020 0.1983226625 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
18 Hb_118282_010 0.2005247978 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
19 Hb_000390_090 0.2021301185 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
20 Hb_106552_070 0.2055387208 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000152_210 Hb_000152_210 Hb_001450_030 Hb_001450_030 Hb_000152_210--Hb_001450_030 Hb_000189_540 Hb_000189_540 Hb_000152_210--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_015807_160 Hb_015807_160 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000155_090 Hb_000155_090 Hb_000152_210--Hb_000155_090 Hb_000008_370 Hb_000008_370 Hb_001450_030--Hb_000008_370 Hb_001767_060 Hb_001767_060 Hb_001450_030--Hb_001767_060 Hb_000390_090 Hb_000390_090 Hb_001450_030--Hb_000390_090 Hb_000176_010 Hb_000176_010 Hb_001450_030--Hb_000176_010 Hb_003181_060 Hb_003181_060 Hb_001450_030--Hb_003181_060 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_020805_060 Hb_020805_060 Hb_000189_540--Hb_020805_060 Hb_000189_540--Hb_000155_090 Hb_007441_170--Hb_000155_090 Hb_006028_020 Hb_006028_020 Hb_007441_170--Hb_006028_020 Hb_007441_170--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_007441_170--Hb_000011_300 Hb_000523_110 Hb_000523_110 Hb_007441_170--Hb_000523_110 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_001863_070 Hb_001863_070 Hb_015807_160--Hb_001863_070 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_002309_050 Hb_002309_050 Hb_000352_200--Hb_002309_050 Hb_000352_200--Hb_000189_540 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_004787_040 Hb_004787_040 Hb_000352_200--Hb_004787_040 Hb_000155_090--Hb_020805_060 Hb_000155_090--Hb_000011_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286607 0.2535 2.12853 1.04976 0.0894119 0.109611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.344121 2.5038 0.376683 0.257767 0.48879

CAGE analysis