Hb_000523_110

Information

Type -
Description -
Location Contig523: 138814-144967
Sequence    

Annotation

kegg
ID rcu:RCOM_0763470
description amine oxidase, putative (EC:1.4.3.4)
nr
ID XP_012074697.1
description PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
swissprot
ID Q8H191
description Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1
trembl
ID A0A067KL71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46903: 138675-145030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_110 0.0 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
2 Hb_001450_030 0.1648872018 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
3 Hb_000152_210 0.1896811074 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012022_140 0.1921766955 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_001269_470 0.1940947231 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
6 Hb_000005_300 0.196412261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015807_160 0.1966082003 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
8 Hb_003181_060 0.2062303497 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
9 Hb_027298_010 0.2115810905 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007416_050 0.2133576322 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
11 Hb_000008_370 0.214043455 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
12 Hb_000028_100 0.2179464935 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
13 Hb_001431_080 0.2187292632 - - 40S ribosomal protein S11, putative [Ricinus communis]
14 Hb_001408_060 0.2188842231 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
15 Hb_004089_020 0.2189584882 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
16 Hb_098315_020 0.2202162616 - - hypothetical protein M569_15712 [Genlisea aurea]
17 Hb_007441_170 0.2202982907 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
18 Hb_002893_110 0.2218601855 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
19 Hb_000390_090 0.2226133536 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
20 Hb_009252_060 0.2227826843 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]

Gene co-expression network

sample Hb_000523_110 Hb_000523_110 Hb_001450_030 Hb_001450_030 Hb_000523_110--Hb_001450_030 Hb_000152_210 Hb_000152_210 Hb_000523_110--Hb_000152_210 Hb_012022_140 Hb_012022_140 Hb_000523_110--Hb_012022_140 Hb_001269_470 Hb_001269_470 Hb_000523_110--Hb_001269_470 Hb_000005_300 Hb_000005_300 Hb_000523_110--Hb_000005_300 Hb_015807_160 Hb_015807_160 Hb_000523_110--Hb_015807_160 Hb_000008_370 Hb_000008_370 Hb_001450_030--Hb_000008_370 Hb_001767_060 Hb_001767_060 Hb_001450_030--Hb_001767_060 Hb_000390_090 Hb_000390_090 Hb_001450_030--Hb_000390_090 Hb_001450_030--Hb_000152_210 Hb_000176_010 Hb_000176_010 Hb_001450_030--Hb_000176_010 Hb_003181_060 Hb_003181_060 Hb_001450_030--Hb_003181_060 Hb_000189_540 Hb_000189_540 Hb_000152_210--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000155_090 Hb_000155_090 Hb_000152_210--Hb_000155_090 Hb_001252_220 Hb_001252_220 Hb_012022_140--Hb_001252_220 Hb_012022_140--Hb_000005_300 Hb_004089_020 Hb_004089_020 Hb_012022_140--Hb_004089_020 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_001269_470--Hb_003181_060 Hb_001711_120 Hb_001711_120 Hb_001269_470--Hb_001711_120 Hb_027298_010 Hb_027298_010 Hb_001269_470--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_001269_470--Hb_009780_050 Hb_001322_230 Hb_001322_230 Hb_001269_470--Hb_001322_230 Hb_001373_130 Hb_001373_130 Hb_001269_470--Hb_001373_130 Hb_000005_300--Hb_001373_060 Hb_000005_300--Hb_001252_220 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_000005_300--Hb_000739_140 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_001863_070 Hb_001863_070 Hb_015807_160--Hb_001863_070 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.903282 1.15711 3.58734 3.03935 0.383944 0.918745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.533195 8.85362 0.707579 0.853829 3.47708

CAGE analysis