Hb_007441_170

Information

Type -
Description -
Location Contig7441: 106986-110673
Sequence    

Annotation

kegg
ID rcu:RCOM_0658510
description rac gtpase, putative (EC:3.1.4.12)
nr
ID XP_012083733.1
description PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
swissprot
ID Q6Z7L8
description Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1
trembl
ID A0A067K1H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14659 PE=3 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein rac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56619: 106923-110752 , PASA_asmbl_56620: 106889-110733 , PASA_asmbl_56621: 108732-110733 , PASA_asmbl_56622: 107004-108716
cDNA
(Sanger)
(ID:Location)		 027_K24.ab1: 107020-110687 , 049_I23.ab1: 107157-110749

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_170 0.0 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
2 Hb_000152_210 0.1522320255 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000155_090 0.1527096772 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
4 Hb_006028_020 0.1777628137 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
5 Hb_000189_540 0.1792811532 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
6 Hb_000011_300 0.1981212595 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
7 Hb_000523_110 0.2202982907 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
8 Hb_001450_030 0.2226039196 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
9 Hb_170426_010 0.2307099317 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
10 Hb_020805_060 0.2308916107 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
11 Hb_001623_070 0.2375887579 - - cytochrome B5 isoform 1, putative [Ricinus communis]
12 Hb_003178_020 0.2417490204 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
13 Hb_000352_200 0.2423433751 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
14 Hb_002811_090 0.247039423 - - 40S ribosomal protein S24A [Hevea brasiliensis]
15 Hb_002686_180 0.2475836064 - - PREDICTED: early nodulin-93-like [Populus euphratica]
16 Hb_000005_300 0.247618193 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001016_080 0.2483480291 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
18 Hb_003057_020 0.250092408 - - 40S ribosomal protein S23, putative [Ricinus communis]
19 Hb_004679_060 0.2531062048 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002631_300 0.2545289323 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_170 Hb_007441_170 Hb_000152_210 Hb_000152_210 Hb_007441_170--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_007441_170--Hb_000155_090 Hb_006028_020 Hb_006028_020 Hb_007441_170--Hb_006028_020 Hb_000189_540 Hb_000189_540 Hb_007441_170--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_007441_170--Hb_000011_300 Hb_000523_110 Hb_000523_110 Hb_007441_170--Hb_000523_110 Hb_001450_030 Hb_001450_030 Hb_000152_210--Hb_001450_030 Hb_000152_210--Hb_000189_540 Hb_015807_160 Hb_015807_160 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000152_210--Hb_000155_090 Hb_000155_090--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_000155_090--Hb_020805_060 Hb_000155_090--Hb_000352_200 Hb_000155_090--Hb_000011_300 Hb_002811_090 Hb_002811_090 Hb_006028_020--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_006028_020--Hb_027472_160 Hb_132840_140 Hb_132840_140 Hb_006028_020--Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_006028_020--Hb_001431_080 Hb_000139_430 Hb_000139_430 Hb_006028_020--Hb_000139_430 Hb_002686_180 Hb_002686_180 Hb_006028_020--Hb_002686_180 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000189_540--Hb_020805_060 Hb_000011_300--Hb_020805_060 Hb_000011_300--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_000011_300--Hb_170426_010 Hb_000291_270 Hb_000291_270 Hb_000011_300--Hb_000291_270 Hb_004089_020 Hb_004089_020 Hb_000011_300--Hb_004089_020 Hb_000005_300 Hb_000005_300 Hb_000011_300--Hb_000005_300 Hb_000523_110--Hb_001450_030 Hb_000523_110--Hb_000152_210 Hb_012022_140 Hb_012022_140 Hb_000523_110--Hb_012022_140 Hb_001269_470 Hb_001269_470 Hb_000523_110--Hb_001269_470 Hb_000523_110--Hb_000005_300 Hb_000523_110--Hb_015807_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85681 0.809615 14.1838 10.7845 0.932478 0.939605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.089 33.4236 2.38864 1.28217 2.86288

CAGE analysis